RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 NR4A3Q92570 626 aa12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 NXF5Q9H1B4 397 aaKnown RBP12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 IGSF5Q9NSI5 407 aa12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 USP36Q9P275 1121 aaKnown RBP12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 SH3BGRL2Q9UJC5 107 aa12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 PIK3C2AO00443 1686 aa12.9□□□□□ -0.34
CHRFAM7A-201ENST00000299847 H0YAE9 185 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LIPCP11150 499 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ETV5P41161 510 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ZNF45Q02386 682 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MALLQ13021 153 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 GBX1Q14549 363 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 NTRK2Q16620 822 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 NDUFAF5Q5TEU4 345 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 RNF175Q8N4F7 328 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LMNTD1Q8N9Z9 388 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FAM71F1Q96KD3 344 aaPredicted RBP12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ST6GALNAC5Q9BVH7 336 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LHPPQ9H008 270 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 KLHL21Q9UJP4 597 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 VDAC3Q9Y277 283 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 DNAJC15Q9Y5T4 150 aa12.9□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SLC1A7O00341 560 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PRICKLE3O43900 615 aaPredicted RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ARSAP15289 507 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 EIF2B1Q14232 305 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SLC5A8Q8N695 610 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 DAZLQ92904 295 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 TSNAXQ99598 290 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SSX3Q99909 188 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LSM5Q9Y4Y9 91 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 BORCS7-ASMTA0A0B4J1R7 106 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 A6NIN4 97 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 VSTM2BA6NLU5 285 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 OR52A4PA6NMU1 304 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 TPPPO94811 219 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 BMXP51813 675 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 TMBIM6P55061 237 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MCCD1P59942 119 aaPredicted RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 RAB4BP61018 213 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ZNF423Q2M1K9 1284 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FAM43BQ6ZT52 329 aaPredicted RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 RCBTB1Q8NDN9 531 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FKBP10Q96AY3 582 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ZNF559Q9BR84 538 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PCDHB16Q9NRJ7 776 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 CREBZFQ9NS37 354 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 KRBA1A5PL33 1030 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PET100P0DJ07 73 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 RNH1P13489 461 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 EDN3P14138 238 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 GGT1P19440 569 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 GRIN2CQ14957 1233 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ZNF181Q2M3W8 571 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LARP4Q71RC2 724 aaKnown RBP eCLIP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 OR51T1Q8NGJ9 327 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 C17orf50Q8WW18 174 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MYLIPQ8WY64 445 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 C7orf50Q9BRJ6 194 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 CARD8Q9Y2G2 431 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SPO11Q9Y5K1 396 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LDB3O75112 727 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 AMY2AP04746 511 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 TMEM225BP0DP42 221 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 IRF2P14316 349 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 DNASE1P24855 282 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 AQP2P41181 271 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 CDKN2CP42773 168 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SPINT3P49223 89 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 LETMD1Q6P1Q0 360 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FBXO27Q8NI29 283 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ASB15Q8WXK1 588 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FAM46BQ96A09 425 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FUBP1Q96AE4 644 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PTERQ96BW5 349 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ZMYND19Q96E35 227 aaPredicted RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 C2orf42Q9NWW7 574 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 ERVK-19Q9WJR5 959 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 STYXL1Q9Y6J8 313 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PHLPP1O60346 1717 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FAM189A1O60320 539 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 HRGP04196 525 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 CD79AP11912 226 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 CD34P28906 385 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 HTR2BP41595 481 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SGSHP51688 502 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MLC1Q15049 377 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 FAM189A2Q15884 450 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 UGT2A3Q6UWM9 527 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SERPINA12Q8IW75 414 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 SCRN2Q96FV2 425 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 NAA11Q9BSU3 229 aaPredicted RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 RBM24Q9BX46 236 aaKnown RBP12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 KATNBL1Q9H079 304 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MMP28Q9H239 520 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 MVB12BQ9H7P6 319 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 NLKQ9UBE8 527 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 PCDHGA8Q9Y5G5 932 aa12.89□□□□□ -0.35
CHRFAM7A-201ENST00000299847 BAZ2AQ9UIF9 1905 aaKnown RBP12.88□□□□□ -0.35
CHRFAM7A-201ENST00000299847 VEGFDO43915 354 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms