RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SIMC1Q8NDZ2 872 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 OR52E4Q8NGH9 312 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 OR5D16Q8NGK9 328 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 RAB8BQ92930 207 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 TSLPQ969D9 159 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 TAAR9Q96RI9 348 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 YIPF4Q9BSR8 244 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 ACTRT3Q9BYD9 372 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 VN1R1Q9GZP7 353 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 A4GALTQ9NPC4 353 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 EQTNQ9NQ60 294 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 C14orf105Q9NVL8 296 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 THUMPD1Q9NXG2 353 aaKnown RBP10.48□□□□□ -0.73
USP3-218ENST00000560202 PTTG2Q9NZH5 202 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 PISDQ9UG56 409 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 ZNF639Q9UID6 485 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 ITGB1BP2Q9UKP3 347 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 MKL2Q9ULH7 1088 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 B3GALT1Q9Y5Z6 326 aa10.48□□□□□ -0.73
USP3-218ENST00000560202 TCRBV16S1A1N1A0A5B0 115 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 PMS2P1A4D2B8 440 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 VSTM2BA6NLU5 285 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 PLD2O14939 933 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 NME6O75414 186 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 ALBP02768 609 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 KLK3P07288 261 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 ARAFP10398 606 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 TNNI3P19429 210 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 S1PR1P21453 382 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 KDELR2P33947 212 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 TXNL4AP83876 142 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 CDK6Q00534 326 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 EXOSC7Q15024 291 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 NSDHLQ15738 373 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 NKG7Q16617 165 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MTX3Q5HYI7 312 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MLIPQ5VWP3 458 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 LCN10Q6JVE6 187 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MFSD12Q6NUT3 480 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ZFP1Q6P2D0 407 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 PLPP5Q8NEB5 264 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 NFKBIDQ8NI38 313 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 NRG4Q8WWG1 115 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 XAGE5Q8WWM1 108 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 FKBP10Q96AY3 582 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 OTUB1Q96FW1 271 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 DUS3LQ96G46 650 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 ZPBPQ9BS86 351 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 DDA1Q9BW61 102 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ASPSCR1Q9BZE9 553 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 SLC26A1Q9H2B4 701 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 AKIRIN1Q9H9L7 192 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 ADAP2Q9NPF8 381 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 TIMMDC1Q9NPL8 285 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 EP300Q09472 2414 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 NUP214P35658 2090 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 A0A1W2PNU3 283 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 DHRS12A0PJE2 317 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 H3BNX3 289 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 TM4SF5O14894 197 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ASNA1O43681 348 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 CBX7O95931 251 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 GPIP06744 558 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 TFPTP0C1Z6 253 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 UMPSP11172 480 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MAN2A2P49641 1150 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 FOXL2P58012 376 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 NHLH1Q02575 133 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ZNF267Q14586 743 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 CDC73Q6P1J9 531 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MRPL14Q6P1L8 145 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 SHISA6Q6ZSJ9 500 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 SLC30A8Q8IWU4 369 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 LGI4Q8N135 537 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 OR52R1Q8NGF1 315 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 WDR36Q8NI36 951 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 FBXO30Q8TB52 745 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ADAMTS15Q8TE58 950 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 PTPMT1Q8WUK0 201 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 SLC38A5Q8WUX1 472 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 CANT1Q8WVQ1 401 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 MR1Q95460 341 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 ZNF578Q96N58 590 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 OR7D2Q96RA2 312 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 SOX17Q9H6I2 414 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 PNO1Q9NRX1 252 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 CCM2LQ9NUG4 571 aaPredicted RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 DCAF13Q9NV06 445 aaKnown RBP10.47□□□□□ -0.73
USP3-218ENST00000560202 P2RX2Q9UBL9 471 aa10.47□□□□□ -0.73
USP3-218ENST00000560202 PRAMEF27A3QJZ7 478 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 SYNDIG1LA6NDD5 238 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 TMEM247A6NEH6 219 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 DUXAA6NLW8 204 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 A8MUA0 341 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 C17orf105B2RV13 164 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 IDSB3KWA1 339 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 C5orf58C9J3I9 102 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 HRKO00198 91 aa10.46□□□□□ -0.74
USP3-218ENST00000560202 CNOT3O75175 753 aaKnown RBP10.46□□□□□ -0.74
USP3-218ENST00000560202 GCM2O75603 506 aaPredicted RBP10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms