RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 KIAA0141Q14154 515 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 LY6DQ14210 128 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 PDK1Q15118 436 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 MLF2Q15773 248 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 UPP1Q16831 310 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 MRGPRG-AS1Q2M3A8 158 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 WSCD2Q2TBF2 565 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 MPPE1Q53F39 396 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 OTUD3Q5T2D3 398 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 C1orf189Q5VU69 101 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 NKAIN2Q5VXU1 208 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 ZNF613Q6PF04 617 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 ZSCAN30Q86W11 494 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 WDR49Q8IV35 697 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 TTC5Q8N0Z6 440 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 CCNYQ8ND76 341 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 OR52B6Q8NGF0 335 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 OR6F1Q8NGZ6 308 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 RAB39BQ96DA2 213 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 MOCOSQ96EN8 888 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 CXorf58Q96LI9 332 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 RAB40CQ96S21 281 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 LGMNQ99538 433 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 WWP1Q9H0M0 922 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 DDX47Q9H0S4 455 aaKnown RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 UPF3AQ9H1J1 476 aaKnown RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 KCNK13Q9HB14 408 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 MRTO4Q9UKD2 239 aaKnown RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 CCPG1Q9ULG6 757 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 RNF215Q9Y6U7 377 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 RIF1Q5UIP0 2472 aaKnown RBP4.07□□□□□ -1.76
LIMA1-205ENST00000550592 GPR179Q6PRD1 2367 aa4.07□□□□□ -1.76
LIMA1-205ENST00000550592 SCN7AQ01118 1682 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 FAM186AA6NE01 2351 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 SSC5DA1L4H1 1573 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CCL15-CCL14A0A0B4J2E2 113 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 SH3PXD2BA1X283 911 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 OR5H15A6NDH6 313 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CCDC69A6NI79 296 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 YJEFN3A6XGL0 299 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 EEF2KO00418 725 aaKnown RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 KIAA0513O60268 411 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 OR6A2O95222 327 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 SLC4A1P02730 911 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CXCL10P02778 98 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 PGK2P07205 417 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 APRTP07741 180 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 TPBGLP0DKB5 382 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 GAP43P17677 238 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 IL10P22301 178 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 TNNT2P45379 298 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 PITPNBP48739 271 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CLK1P49759 484 aaKnown RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 SSTP61278 116 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 IL1RL1Q01638 556 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 RBBP4Q09028 425 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 GAMTQ14353 236 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CCL15Q16663 113 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CCDC92Q53HC0 331 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 NEPROQ6NW34 567 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 TBC1D10CQ8IV04 446 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 GVQW1Q8N7I0 195 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 MRPL43Q8N983 215 aaKnown RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 TCP11Q8WWU5 503 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 PRICKLE1Q96MT3 831 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 MCRIP2Q9BUT9 160 aaKnown RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 XPO4Q9C0E2 1151 aaKnown RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 ABCG4Q9H172 646 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 CXXC4Q9H2H0 198 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 PLEKHA3Q9HB20 300 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 GDF3Q9NR23 364 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 VPS54Q9P1Q0 977 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 THAP10Q9P2Z0 257 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-205ENST00000550592 FAM153AQ9UHL3 310 aa4.06□□□□□ -1.76
LIMA1-205ENST00000550592 IGHV4-30-2A0A087WSY4 118 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 RNF103-CHMP3A0A140T963 221 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 SOCS3O14543 225 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 DCXO43602 365 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 IDH3BO43837 385 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 SNAP91O60641 907 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 CSO75390 466 aaKnown RBP4.05□□□□□ -1.76
LIMA1-205ENST00000550592 GEMP55040 296 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 KNOP1Q1ED39 458 aaKnown RBP4.05□□□□□ -1.76
LIMA1-205ENST00000550592 CEP85LQ5SZL2 805 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 TEX35Q5T0J7 233 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 HIST2H2AA3Q6FI13 130 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 FAAP20Q6NZ36 180 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 MFSD7Q6UXD7 560 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ZNF730Q6ZMV8 503 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 CDHR3Q6ZTQ4 885 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ITIH5Q86UX2 942 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 APOBEC3FQ8IUX4 373 aaKnown RBP4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ELMOD2Q8IZ81 293 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 HDDC3Q8N4P3 179 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 AQP11Q8NBQ7 271 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 SPPL2AQ8TCT8 520 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ESAMQ96AP7 390 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms