RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 MKKSQ9NPJ1 570 aaPredicted RBP7.14□□□□□ -1.27
HDAC3-216ENST00000523088 DYRK4Q9NR20 520 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 HEBP1Q9NRV9 189 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 SLCO1C1Q9NYB5 712 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 GPR160Q9UJ42 338 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 LEF1Q9UJU2 399 aaPredicted RBP7.14□□□□□ -1.27
HDAC3-216ENST00000523088 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.14□□□□□ -1.27
HDAC3-216ENST00000523088 TCAF1Q9Y4C2 921 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 DMDP11532 3685 aa7.14□□□□□ -1.27
HDAC3-216ENST00000523088 A0A1W2PPV4 95 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 FAM234BA2RU67 622 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CLEC18AA5D8T8 446 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 METTL21EPA6NDL7 271 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CCDC182A6NF36 153 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SERPINE3A8MV23 424 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 PTGES3LE9PB15 166 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 AURKAO14965 403 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ARPC5O15511 151 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 NDUFS3O75489 264 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SNAPC5O75971 98 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 DFFBO76075 338 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SUPT7LO94864 414 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 PAPSS2O95340 614 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 C2P06681 752 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SPARCP09486 303 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TRIM49P0CI25 452 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TRIM49CP0CI26 452 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SCGB1A1P11684 91 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 MUC1P15941 1255 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZNF7P17097 686 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 FPR3P25089 353 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SHMT2P34897 504 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CNR2P34972 360 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 PSMB10P40306 273 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 KCNJ1P48048 391 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 KPNA2P52292 529 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TNNC1P63316 161 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 MRPS22P82650 360 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 IRF8Q02556 426 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CACNG1Q06432 222 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 EGR3Q06889 387 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 RCAN2Q14206 197 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 MESDQ14696 234 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 NR1I3Q14994 352 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 PDGFRLQ15198 375 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TRIP4Q15650 581 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 HAGHQ16775 308 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 N4BP2L1Q5TBK1 243 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 RAP1GAP2Q684P5 730 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ACSM5Q6NUN0 579 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SHC4Q6S5L8 630 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 BTNL3Q6UXE8 466 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 GAREM2Q75VX8 874 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZNF573Q86YE8 665 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 APCDD1Q8J025 514 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 LGI2Q8N0V4 545 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ARRDC1Q8N5I2 433 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 C12orf45Q8N5I9 185 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TXNDC5Q8NBS9 432 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CLEC18CQ8NCF0 446 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TSPAN14Q8NG11 270 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SNX33Q8WV41 574 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZCCHC14Q8WYQ9 949 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SLC39A7Q92504 469 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZNF516Q92618 1163 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 DVL3Q92997 716 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 RBPMSQ93062 196 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TMEM186Q96B77 213 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 HPDLQ96IR7 371 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 KLHL32Q96NJ5 620 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZNF599Q96NL3 588 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CGRRF1Q99675 332 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 NIPSNAP1Q9BPW8 284 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 WDR77Q9BQA1 342 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 TMEM109Q9BVC6 243 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ACE2Q9BYF1 805 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ACTR6Q9GZN1 396 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SLC6A16Q9GZN6 736 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 RNF32Q9H0A6 362 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CRISPLD1Q9H336 500 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 WDR41Q9HAD4 459 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 NMNAT1Q9HAN9 279 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 LPAR2Q9HBW0 351 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 CSNK1G1Q9HCP0 422 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 MYNNQ9NPC7 610 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 FBXO8Q9NRD0 319 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 ZFP57Q9NU63 452 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 IMP3Q9NV31 184 aaKnown RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 MARCH4Q9P2E8 410 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 OPN4Q9UHM6 478 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SCP2D1Q9UJQ7 156 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 SLC27A5Q9Y2P5 690 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 NEU2Q9Y3R4 380 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 WASF2Q9Y6W5 498 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 EP300Q09472 2414 aaPredicted RBP7.13□□□□□ -1.27
HDAC3-216ENST00000523088 RALGAPA1Q6GYQ0 2036 aa7.13□□□□□ -1.27
HDAC3-216ENST00000523088 A0A087WXM4 84 aa7.12□□□□□ -1.27
HDAC3-216ENST00000523088 TRAV19A0A0A6YYK7 116 aa7.12□□□□□ -1.27
HDAC3-216ENST00000523088 MYBPHLA2RUH7 354 aa7.12□□□□□ -1.27
HDAC3-216ENST00000523088 OR14I1A6ND48 311 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms