RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 VN1R4Q7Z5H5 301 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 IL17RCQ8NAC3 791 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 CNPPD1Q9BV87 410 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 TSSK6Q9BXA6 273 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 C1QTNF2Q9BXJ5 285 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 PCBD2Q9H0N5 130 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 FBXO8Q9NRD0 319 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 ENTPD4Q9Y227 616 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 SLC17A4Q9Y2C5 497 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 PCDHGA4Q9Y5G9 962 aa11.71□□□□□ -0.53
HMGN1-220ENST00000492280 ALPK2Q86TB3 2170 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 HYAL3O43820 417 aaPredicted RBP11.71□□□□□ -0.54
HMGN1-220ENST00000492280 CSO75390 466 aaKnown RBP11.71□□□□□ -0.54
HMGN1-220ENST00000492280 RASGRP1O95267 797 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 HBQ1P09105 142 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 PPP2R1BP30154 601 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 IRF3Q14653 427 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 LIPKQ5VXJ0 399 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 KIAA1324Q6UXG2 1013 aaKnown RBP11.71□□□□□ -0.54
HMGN1-220ENST00000492280 CASP12Q6UXS9 341 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 KIF18BQ86Y91 864 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 ZFP41Q8N8Y5 198 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 C14orf119Q9NWQ9 140 aa11.71□□□□□ -0.54
HMGN1-220ENST00000492280 MRPS2Q9Y399 296 aaKnown RBP11.71□□□□□ -0.54
HMGN1-220ENST00000492280 A0A1W2PQF6 199 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 CACNB4O00305 520 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ZSCAN9O15535 394 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PIP5K1CO60331 668 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 SERPINB7O75635 380 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 SPNP16150 400 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 TRHRP34981 398 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 EIF2DP41214 584 aaKnown RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 GINS1Q14691 196 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PLAG1Q6DJT9 500 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 B3GLCTQ6Y288 498 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 CADM3Q8N126 398 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 SLC16A11Q8NCK7 471 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 NUP43Q8NFH3 380 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 SLC9A6Q92581 669 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 FAM46AQ96IP4 442 aaKnown RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 OR7D2Q96RA2 312 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 HHATLQ9HCP6 504 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PALMDQ9NP74 551 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 STARD5Q9NSY2 213 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ACSS1Q9NUB1 689 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 TBCCD1Q9NVR7 557 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ZNF624Q9P2J8 865 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 CHST2Q9Y4C5 530 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 LINC00854A0A1B0GVQ3 168 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 GSAPA4D1B5 854 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PLRG1O43660 514 aaKnown RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PRICKLE3O43900 615 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 CTSVO60911 334 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PDE9AO76083 593 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 LAMP2P13473 410 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 POLR2CP19387 275 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 FUT1P19526 365 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 AZGP1P25311 298 aaKnown RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 HSD17B2P37059 387 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 RFX3P48380 749 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PDX1P52945 283 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PPP1CAP62136 330 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 HYAL1Q12794 435 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ELOAQ14241 798 aaKnown RBP11.7□□□□□ -0.54
HMGN1-220ENST00000492280 AGERQ15109 404 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ZIC1Q15915 447 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 OR2G6Q5TZ20 316 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 STEAP3Q658P3 488 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 ATCAYQ86WG3 371 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 OR2L5Q8NG80 312 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 OR8D4Q8NGM9 314 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 FCGR1BQ92637 280 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 LRR1Q96L50 414 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 FAIM2Q9BWQ8 316 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 MROQ9BYG7 248 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 PCDHGA3Q9Y5H0 932 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 AP1M2Q9Y6Q5 423 aa11.7□□□□□ -0.54
HMGN1-220ENST00000492280 FAAHO00519 579 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 KPNA4O00629 521 aaPredicted RBP11.69□□□□□ -0.54
HMGN1-220ENST00000492280 COL6A3P12111 3177 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 F3P13726 295 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 ALOX12P18054 663 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 TGM1P22735 817 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 GPR4P46093 362 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 MAN2A2P49641 1150 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 KHKP50053 298 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 DMPKQ09013 629 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 ZNF311Q5JNZ3 666 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 MLIPQ5VWP3 458 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 USP43Q70EL4 1123 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 AMIGO1Q86WK6 493 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 NKAIN4Q8IVV8 208 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 OR7G2Q8NG99 324 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 OR2M4Q96R27 311 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 TIMM29Q9BSF4 260 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 TCEAL2Q9H3H9 227 aaPredicted RBP11.69□□□□□ -0.54
HMGN1-220ENST00000492280 TRPV4Q9HBA0 871 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 SEMA4GQ9NTN9 838 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 A0A087WUU8 490 aa11.69□□□□□ -0.54
HMGN1-220ENST00000492280 LOC105369274A0A096LPK9 316 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms