RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PRKAG1P54619 331 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 SF3A3Q12874 501 aaKnown RBP eCLIP10.75□□□□□ -0.69
CUX1-207ENST00000465461 MRPL49Q13405 166 aaKnown RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 SMU1Q2TAY7 513 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 LSM12Q3MHD2 195 aaKnown RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 RNFT1Q5M7Z0 435 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 PRAMEF20Q5VT98 475 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 OR4F3Q6IEY1 312 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 RPUSD3Q6P087 351 aaKnown RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 OPN5Q6U736 354 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 EPGNQ6UW88 154 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 FAM180AQ6UWF9 173 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 NPSR1Q6W5P4 371 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 SZRD1Q7Z422 152 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 CLECL1Q8IZS7 167 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 KIRREL3Q8IZU9 778 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 CLEC4FQ8N1N0 589 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 TMEM178AQ8NBL3 297 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 PSD4Q8NDX1 1056 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 FAM13CQ8NE31 585 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 OR10G3Q8NGC4 313 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 OR4N2Q8NGD1 307 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 TP53INP1Q96A56 240 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 TMEM125Q96AQ2 219 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 COQ8BQ96D53 544 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 MTERF3Q96E29 417 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 SPACA9Q96E40 222 aaPredicted RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 OTUB1Q96FW1 271 aaPredicted RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 LCORQ96JN0 433 aaPredicted RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 MAELQ96JY0 434 aaKnown RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 DUSP26Q9BV47 211 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 DPY30Q9C005 99 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 EQTNQ9NQ60 294 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 DDX18Q9NVP1 670 aaKnown RBP10.75□□□□□ -0.69
CUX1-207ENST00000465461 AIG1Q9NVV5 245 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 PRODH2Q9UF12 536 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 NPFFR2Q9Y5X5 522 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 SHANK1Q9Y566 2161 aa10.75□□□□□ -0.69
CUX1-207ENST00000465461 KALRNO60229 2985 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 SPTA1P02549 2419 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 PLOD2O00469 737 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ERN1O75460 977 aaKnown RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 BCAS2O75934 225 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 FBXO45P0C2W1 286 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 CT45A8P0DMV1 189 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 CT45A9P0DMV2 189 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ABCD3P28288 659 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 IL12AP29459 219 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 DNASE1L1P49184 302 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 IDH3AP50213 366 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 AQP5P55064 265 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 WNT3P56703 355 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 PHC1P78364 1004 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ZNF155Q12901 538 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 HSP90B2PQ58FF3 399 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 CT45A2Q5DJT8 189 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 BICRALQ6AI39 1079 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 OGFOD2Q6N063 350 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 RTL4Q6ZR62 310 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 SPATA19Q7Z5L4 167 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ANKRD46Q86W74 232 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 SLC44A2Q8IWA5 706 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 TAGAPQ8N103 731 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 OR2L13Q8N349 312 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 SLC15A4Q8N697 577 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 BCORP1Q8N888 145 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 NUP43Q8NFH3 380 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ZFP28Q8NHY6 868 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 FBXO30Q8TB52 745 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 FAR1Q8WVX9 515 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 TMBIM1Q969X1 311 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 OMA1Q96E52 524 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ZBED6CLQ96FA7 236 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 C16orf58Q96GQ5 468 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ZNF764Q96H86 408 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 VSTM2LQ96N03 204 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 FRMD6Q96NE9 622 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 YIPF4Q9BSR8 244 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 CXorf36Q9H7Y0 433 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 TIMMDC1Q9NPL8 285 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 SIRT3Q9NTG7 399 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 OLAHQ9NV23 265 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 TAS2R9Q9NYW1 312 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 C19orf53Q9UNZ5 99 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 CFL2Q9Y281 166 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 GPR55Q9Y2T6 319 aaPredicted RBP10.74□□□□□ -0.69
CUX1-207ENST00000465461 SNX8Q9Y5X2 465 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 GPR45Q9Y5Y3 372 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 ZNF462Q96JM2 2506 aa10.74□□□□□ -0.69
CUX1-207ENST00000465461 A0A087WV62 115 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 C2orf72A6NCS6 295 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 E9PBE3 544 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 NPIPA5E9PKD4 350 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 CFLARO15519 480 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 COQ9O75208 318 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 CPSF4O95639 269 aaKnown RBP10.73□□□□□ -0.69
CUX1-207ENST00000465461 CNR1P21554 472 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 DRD5P21918 477 aa10.73□□□□□ -0.69
CUX1-207ENST00000465461 RPL3P39023 403 aaKnown RBP10.73□□□□□ -0.69
CUX1-207ENST00000465461 PPICP45877 212 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms