RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TREX2Q9BQ50 279 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 CNPPD1Q9BV87 410 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 ALOXE3Q9BYJ1 711 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 TRIM2Q9C040 744 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 FAM118AQ9NWS6 357 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 COL4A3Q01955 1670 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 IGHV1OR21-1A0A087WYE8 117 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 A0A0A6YYC8 382 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 ZNF860A6NHJ4 632 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 I3L1I5 382 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 POLR1CO15160 346 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 PGRMC2O15173 223 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 B4GALT2O60909 372 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 WNT1P04628 370 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 GUSBP08236 651 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 CXCR4P61073 352 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 PRTGQ2VWP7 1150 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 ARHGAP11BQ3KRB8 267 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 ZNF730Q6ZMV8 503 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 OR4C6Q8NH72 309 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 VANGL1Q8TAA9 524 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 KAT2AQ92830 837 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 MAL2Q969L2 176 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 ZNF559Q9BR84 538 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 PRMT8Q9NR22 394 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 NXT1Q9UKK6 140 aaKnown RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 GPC6Q9Y625 555 aaPredicted RBP7.88□□□□□ -1.15
USP54-203ENST00000418501 RNF215Q9Y6U7 377 aa7.88□□□□□ -1.15
USP54-203ENST00000418501 LOC105369274A0A096LPK9 316 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 LOC102723532A0A0G2JNH3 316 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 H3BN98 237 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 K7ESF4 209 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 HMGN4O00479 90 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 DSCR3O14972 297 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CCDC159P0C7I6 412 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 NRG3P56975 720 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TEKQ02763 1124 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 MAP4K2Q12851 820 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 RUNX2Q13950 521 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 MINDY4Q4G0A6 757 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 OR4N4Q8N0Y3 316 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 OR2L13Q8N349 312 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 DTWD2Q8NBA8 298 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 OR9A4Q8NGU2 314 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SLC35B4Q969S0 331 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 DGCR14Q96DF8 476 aaKnown RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 PTCHD1Q96NR3 888 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SLC29A1Q99808 456 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TUBA1CQ9BQE3 449 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 C5AR2Q9P296 337 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PRAMEF33A0A0G2JMD5 474 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SLC16A6O15403 523 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 ATP6V1B1P15313 513 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 BCKDHBP21953 392 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SEPHS1P49903 392 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PCBP3P57721 371 aaKnown RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 NHSL2Q5HYW2 709 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 COX20Q5RI15 118 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TTLL10Q6ZVT0 673 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 VTCN1Q7Z7D3 282 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 C17orf82Q86X59 251 aaPredicted RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 SLC43A2Q8N370 569 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TAMM41Q96BW9 452 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CLIP3Q96DZ5 547 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PEX11GQ96HA9 241 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CCNL2Q96S94 520 aaPredicted RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 GAREM1Q9H706 876 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 HCN3Q9P1Z3 774 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PCDHGA8Q9Y5G5 932 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PCDHGA5Q9Y5G8 931 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SNX11Q9Y5W9 270 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CEP290O15078 2479 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 A0A1B0GX78 115 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 OR5F1O95221 314 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 ANGPTL1O95841 491 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 HMGN1P05114 100 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 NUDT7P0C024 238 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 STT3AP46977 705 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 NUBP1P53384 320 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 KCNJ10P78508 379 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TUBA3CQ13748 450 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 ZNF528Q3MIS6 628 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CWF19L1Q69YN2 538 aaKnown RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 UGT2A3Q6UWM9 527 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 RNF111Q6ZNA4 994 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 ZNF614Q8N883 585 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 SMYD1Q8NB12 490 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 OR51Q1Q8NH59 317 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 C9orf43Q8TAL5 461 aaPredicted RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 CNRIP1Q96F85 164 aaPredicted RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 FCRL4Q96PJ5 515 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 MACROD1Q9BQ69 325 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 CES1P1Q9UKY3 287 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 USP22Q9UPT9 525 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 TMEM221A6NGB7 291 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 M0R296 226 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 FOXD2O60548 495 aaPredicted RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 MFN2O95140 757 aa7.87□□□□□ -1.15
USP54-203ENST00000418501 PABPC4LP0CB38 370 aaKnown RBP7.87□□□□□ -1.15
USP54-203ENST00000418501 GABRA3P34903 492 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms