RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZNF468Q5VIY5 522 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 ATG16L1Q676U5 607 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 LYPD8Q6UX82 237 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 MDGA2Q7Z553 956 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 GSPT2Q8IYD1 628 aaKnown RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 CCDC116Q8IYX3 515 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 SHISA5Q8N114 240 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 VPS37AQ8NEZ2 397 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 GOT1L1Q8NHS2 421 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 SPPL2AQ8TCT8 520 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 OIT3Q8WWZ8 545 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 CNRIP1Q96F85 164 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 SLC35A4Q96G79 324 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 APIPQ96GX9 242 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 BTBD9Q96Q07 612 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 BRINP2Q9C0B6 783 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 ARGLU1Q9NWB6 273 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 ANKRD10Q9NXR5 420 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 ASIC5Q9NY37 505 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 BCAP29Q9UHQ4 241 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 NPIPA1Q9UND3 350 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 C19orf53Q9UNZ5 99 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 EIF3LQ9Y262 564 aaKnown RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 RAP2CQ9Y3L5 183 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 CHCHD2Q9Y6H1 151 aaPredicted RBP5.89□□□□□ -1.47
USP54-202ENST00000413442 BSNQ9UPA5 3926 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 MYO18BQ8IUG5 2567 aa5.89□□□□□ -1.47
USP54-202ENST00000413442 PHF3Q92576 2039 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 PRRC2CQ9Y520 2896 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 TRGV8A0A0C4DH27 118 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DUXAA6NLW8 204 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 TRPC5OSA6NMA1 111 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 FIGNL2A6NMB9 653 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 KLF11O14901 512 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 LSM1O15116 133 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 PRKNO60260 465 aaPredicted RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 MAN1A2O60476 641 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 SEMA7AO75326 666 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 TRIM3O75382 744 aaPredicted RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 ERN1O75460 977 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 AGR2O95994 175 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ACTL6AO96019 429 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 F10P00742 488 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 CLPSP04118 112 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 HPNP05981 417 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ABCB1P08183 1280 aaPredicted RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 ABCD3P28288 659 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 SSTR4P31391 388 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 MAGEA8P43361 318 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 UQCRFS1P47985 274 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 SERPINB4P48594 390 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 MAN2A2P49641 1150 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 MANFP55145 182 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 ABCE1P61221 599 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 KCNJ2P63252 427 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 PRR5P85299 388 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 OCRLQ01968 901 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ID2Q02363 134 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 BTKQ06187 659 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 FOXO1Q12778 655 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 STX3Q13277 289 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 BCL2A1Q16548 175 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DECR1Q16698 335 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ZNF750Q32MQ0 723 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 RFTN2Q52LD8 501 aaPredicted RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 TRMT12Q53H54 448 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 CMPK2Q5EBM0 449 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 XKR7Q5GH72 579 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 NHSL2Q5HYW2 709 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 C6orf136Q5SQH8 315 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 AP1ARQ63HQ0 302 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DGAT2L6Q6ZPD8 337 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 RPS27LQ71UM5 84 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 CAMKMTQ7Z624 323 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DOLPP1Q86YN1 238 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 TICAM1Q8IUC6 712 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DDIASQ8IXT1 998 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 OR2L13Q8N349 312 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 CPSF7Q8N684 471 aaKnown RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 CDRT4Q8N9R6 151 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 OR2W6PQ8NHA6 318 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 TWIST2Q8WVJ9 160 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DIO2Q92813 273 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 HOXB13Q92826 284 aaPredicted RBP5.88□□□□□ -1.47
USP54-202ENST00000413442 PMM1Q92871 262 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 PPCDCQ96CD2 204 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 COQ8BQ96D53 544 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ELP4Q96EB1 424 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 LRRC46Q96FV0 321 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 ZNF597Q96LX8 424 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 COL21A1Q96P44 957 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 GAL3ST4Q96RP7 486 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 DOHHQ9BU89 302 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 TTTY12Q9BZ98 90 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 HOXD1Q9GZZ0 328 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 LDAHQ9H6V9 325 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 VIPAS39Q9H9C1 493 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 Q9N2J8 555 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 KCNK9Q9NPC2 374 aa5.88□□□□□ -1.47
USP54-202ENST00000413442 THAP1Q9NVV9 213 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms