RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CHRM5P08912 532 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-201ENST00000343916 HOXB2P14652 356 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 PPP2R2DQ66LE6 453 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 C12orf73Q69YU5 71 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 ZNF425Q6IV72 752 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 BBS10Q8TAM1 723 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 TSACCQ96A04 125 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-201ENST00000343916 DACH2Q96NX9 599 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 C1QTNF7Q9BXJ2 289 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 SCN2AQ99250 2005 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 ARHGAP33O14559 1287 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 LGI1O95970 557 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 FHP07954 510 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 CSNK2A2P19784 350 aaPredicted RBP18.21■□□□□ 0.5
COL9A3-201ENST00000343916 TNFRSF4P43489 277 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 MAN2A2P49641 1150 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 LIMK1P53667 647 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 SNRPGP62308 76 aaKnown RBP18.21■□□□□ 0.5
COL9A3-201ENST00000343916 OLR1P78380 273 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 HYAL1Q12794 435 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 SSX1Q16384 188 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM64Q6YI46 380 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 VN1R4Q7Z5H5 301 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 MFSD9Q8NBP5 474 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 KLHL25Q9H0H3 589 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 BCL2L10Q9HD36 194 aa18.21■□□□□ 0.5
COL9A3-201ENST00000343916 PRKYO43930 277 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 SOX3P41225 446 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 ATAT1Q5SQI0 421 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 BHLHB9Q6PI77 547 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 PLEKHG7Q6ZR37 379 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 SLC22A16Q86VW1 577 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 ATCAYQ86WG3 371 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 C9orf43Q8TAL5 461 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 OR7D2Q96RA2 312 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 MMP27Q9H306 513 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF624Q9P2J8 865 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 NDOR1Q9UHB4 597 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 GPR55Q9Y2T6 319 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 COLEC10Q9Y6Z7 277 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 TICRRQ7Z2Z1 1910 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 PRUNE2Q8WUY3 3088 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 TLX2O43763 284 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 GUCY1B2O75343 617 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 KLF8O95600 359 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 EGFP01133 1207 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 MPIP34949 423 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 SMIM11AP58511 58 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 CHRNEQ04844 493 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 FAM92BQ6ZTR7 304 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 C11orf74Q86VG3 221 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 VRK2Q86Y07 508 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 SLC34A3Q8N130 599 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 CYP4Z2PQ8N1L4 340 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 NUP43Q8NFH3 380 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 COL26A1Q96A83 441 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 FAM131CQ96AQ9 280 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 SARGQ9BW04 601 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 KIR3DX1Q9H7L2 352 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF232Q9UNY5 417 aa18.2■□□□□ 0.5
COL9A3-201ENST00000343916 RBMX2Q9Y388 322 aaKnown RBP18.2■□□□□ 0.5
COL9A3-201ENST00000343916 KIAA0513O60268 411 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 ALOX5P09917 674 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 GSTT2P0CG29 244 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 GSTT2BP0CG30 244 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF888P0CJ79 500 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF91Q05481 1191 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 AGAP7PQ5VUJ5 663 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 SDE2Q6IQ49 451 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 PAQR6Q6TCH4 344 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 AMER2Q8N7J2 671 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 MORN4Q8NDC4 146 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 SIMC1Q8NDZ2 872 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 OR56A1Q8NGH5 318 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 ELP4Q96EB1 424 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 SCARF2Q96GP6 870 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF681Q96N22 645 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 OPALINQ96PE5 141 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 GABRG3Q99928 467 aa18.19■□□□□ 0.5
COL9A3-201ENST00000343916 KCNJ13O60928 360 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 CD40LGP29965 261 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 PPP5CP53041 499 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 PRR5P85299 388 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 HOXC5Q00444 222 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 DLX2Q07687 328 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ACSM5Q6NUN0 579 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SHISA5Q8N114 240 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 KBTBD8Q8NFY9 601 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 OR8J1Q8NGP2 316 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SFXN5Q8TD22 340 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 PRRC1Q96M27 445 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 CDCA3Q99618 268 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SPATA5L1Q9BVQ7 753 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 TSSK6Q9BXA6 273 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 PLA2G12AQ9BZM1 189 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM168Q9H0V1 697 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SLC38A1Q9H2H9 487 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ABCB10Q9NRK6 738 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SNX7Q9UNH6 387 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 KLK4Q9Y5K2 254 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms