RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FANCEQ9HB96 536 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 C19orf53Q9UNZ5 99 aaPredicted RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 CLDN16Q9Y5I7 305 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 A0A087WV62 115 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 OR2W5A6NFC9 320 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 ASNA1O43681 348 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 HYAL3O43820 417 aaPredicted RBP15.78■□□□□ 0.12
CLN3-252ENST00000636907 SLITRK5O94991 958 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 DIRAS1O95057 198 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 CT62P0C5K7 136 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 TNFRSF1BP20333 461 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 BTG2P78543 158 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 IGLV3-21P80748 117 aaPredicted RBP15.78■□□□□ 0.12
CLN3-252ENST00000636907 TXNL4AP83876 142 aaKnown RBP15.78■□□□□ 0.12
CLN3-252ENST00000636907 IQCCQ4KMZ1 466 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 TBPL2Q6SJ96 375 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 SPPL2AQ8TCT8 520 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 LZICQ8WZA0 190 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 C7orf34Q96L11 122 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 DPYSL5Q9BPU6 564 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 TREX2Q9BQ50 279 aaPredicted RBP15.78■□□□□ 0.12
CLN3-252ENST00000636907 VNN3Q9NY84 501 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 RAB26Q9ULW5 256 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 ZNF451Q9Y4E5 1061 aa15.78■□□□□ 0.12
CLN3-252ENST00000636907 A0A0C4DFX4 3053 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 AGRPO00253 132 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 CLDN4O14493 209 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 EI24O14681 340 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 GALR2O43603 387 aaPredicted RBP15.77■□□□□ 0.12
CLN3-252ENST00000636907 OR10H2O60403 315 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 PLOD3O60568 738 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 JRKO75564 520 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 MFN2O95140 757 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 CHRM4P08173 479 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 HSPA13P48723 471 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 STX4Q12846 297 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 PPP1R8Q12972 351 aaKnown RBP15.77■□□□□ 0.12
CLN3-252ENST00000636907 CYP27C1Q4G0S4 372 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 IFI44LQ53G44 452 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 PLA2G2CQ5R387 149 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 CDC73Q6P1J9 531 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 SLC16A11Q8NCK7 471 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 CTHRC1Q96CG8 243 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 MAGED1Q9Y5V3 778 aaPredicted RBP15.77■□□□□ 0.12
CLN3-252ENST00000636907 AP4B1Q9Y6B7 739 aa15.77■□□□□ 0.12
CLN3-252ENST00000636907 PRAMEF25A6NGN4 478 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 DSCR3O14972 297 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 PDE9AO76083 593 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 IFI6P09912 130 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ZNF883P0CG24 379 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 CD247P20963 164 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 MAOAP21397 527 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 OR1E2P47887 323 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 CRISP3P54108 245 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ARSFP54793 590 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 HSD17B7P56937 341 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 EXOSC7Q15024 291 aaKnown RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 DUSP7Q16829 419 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 YOD1Q5VVQ6 348 aaPredicted RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 OR2T5Q6IEZ7 315 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 TSEN54Q7Z6J9 526 aaKnown RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 TMEM179BQ7Z7N9 219 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ARMC8Q8IUR7 673 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ST13P4Q8IZP2 240 aaPredicted RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 OR2T29Q8NH02 315 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 BBS10Q8TAM1 723 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ADAMTS15Q8TE58 950 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 SLC35A4Q96G79 324 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ZNF607Q96SK3 696 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 YIPF2Q9BWQ6 316 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 RSPO3Q9BXY4 272 aaPredicted RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 ALOXE3Q9BYJ1 711 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 BCL2L10Q9HD36 194 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ADAP2Q9NPF8 381 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 C8orf4Q9NR00 106 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 LANCL2Q9NS86 450 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 BAG5Q9UL15 447 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 CDC14AQ9UNH5 594 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 PADI2Q9Y2J8 665 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 GPC6Q9Y625 555 aaPredicted RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 WDFY4Q6ZS81 3184 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 LNP1A1A4G5 178 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 G3V2T6 193 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 BMP10O95393 424 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ACP2P11117 423 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 ACY1Q03154 408 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 GNA13Q14344 377 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 GPAT3Q53EU6 434 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 OTUD3Q5T2D3 398 aaPredicted RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 C6orf52Q5T4I8 152 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 DBX2Q6ZNG2 339 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 STK32CQ86UX6 486 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 HS3ST5Q8IZT8 346 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 SLC9A6Q92581 669 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 CNDP2Q96KP4 475 aaKnown RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 COL21A1Q96P44 957 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 GFM1Q96RP9 751 aaKnown RBP15.76■□□□□ 0.11
CLN3-252ENST00000636907 CXorf21Q9HAI6 301 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 C11orf16Q9NQ32 467 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 GIN1Q9NXP7 522 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms