RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SECISBP2Q96T21 854 aaKnown RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 ZNF717Q9BY31 904 aaPredicted RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 ZCCHC2Q9C0B9 1178 aaKnown RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 SLAMF7Q9NQ25 335 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 TEX10Q9NXF1 929 aaPredicted RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 CASP8AP2Q9UKL3 1982 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 ORC5O43913 435 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 SERPINI2O75830 405 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 TIMP2P16035 220 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 MLLT11Q13015 90 aaPredicted RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 ARL9Q6T311 187 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 RNF165Q6ZSG1 346 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 PEX5LQ8IYB4 626 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 OR6C4Q8NGE1 309 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 OR56A3Q8NH54 315 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 POF1BQ8WVV4 589 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 TCEAL4Q96EI5 215 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 CHST8Q9H2A9 424 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 OR51V1Q9H2C8 321 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 TMEM38AQ9H6F2 299 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 IMP3Q9NV31 184 aaKnown RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 MAT2BQ9NZL9 334 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 KLHL42Q9P2K6 505 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 P2RX2Q9UBL9 471 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 POLR1CO15160 346 aaPredicted RBP13.71□□□□□ -0.22
VPS35-210ENST00000568784 ZNF30P17039 623 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 ILKQ13418 452 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 MEDAGQ5VYS4 303 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 CCSAPQ6IQ19 270 aaPredicted RBP13.71□□□□□ -0.22
VPS35-210ENST00000568784 UNC5DQ6UXZ4 953 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 OR4D11Q8NGI4 311 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 OR6T1Q8NGN1 323 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 TM9SF4Q92544 642 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 TFGQ92734 400 aaPredicted RBP13.71□□□□□ -0.22
VPS35-210ENST00000568784 SLC25A46Q96AG3 418 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 AIF1LQ9BQI0 150 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 KATNB1Q9BVA0 655 aa13.71□□□□□ -0.22
VPS35-210ENST00000568784 PCSK2P16519 638 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 SLX4IPQ5VYV7 408 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 ZER1Q7Z7L7 766 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 CREB3L4Q8TEY5 395 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 FKBP14Q9NWM8 211 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 TOXO94900 526 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 PTPN2P17706 415 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 NTSP30990 170 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 HYAL2Q12891 473 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 BCL2L15Q5TBC7 163 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 MLIPQ5VWP3 458 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 SLC27A4Q6P1M0 643 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 PLEKHM3Q6ZWE6 761 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 C16orf62Q7Z3J2 963 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 GDPD1Q8N9F7 314 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 PIGKQ92643 395 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 RAD51AP1Q96B01 352 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 ZNF582Q96NG8 517 aaPredicted RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 LYSMD1Q96S90 227 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 PLA2G12AQ9BZM1 189 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 MED28Q9H204 178 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 MIXL1Q9H2W2 232 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 ELAC1Q9H777 363 aaKnown RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 MYNNQ9NPC7 610 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 CXXC1Q9P0U4 656 aaPredicted RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 IL36AQ9UHA7 158 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 SPTBP11277 2137 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 IGLV3-16A0A075B6K0 115 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 AGAP14A8MT82 685 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 FGBP02675 491 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 INHAP05111 366 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 MRPL3P09001 348 aaKnown RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 ETV6P41212 452 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 RGS8P57771 180 aaPredicted RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 FNDC3BQ53EP0 1204 aaKnown RBP13.7□□□□□ -0.22
VPS35-210ENST00000568784 ANKK1Q8NFD2 765 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 OR10H4Q8NGA5 316 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 SAP130Q9H0E3 1048 aa13.7□□□□□ -0.22
VPS35-210ENST00000568784 PCDH8O95206 1070 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 GALK2Q01415 458 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 FABP5Q01469 135 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 Q5BKY6 102 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 MZT2AQ6P582 158 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 LRRC17Q8N6Y2 441 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 GANCQ8TET4 914 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 PLPP1O14494 284 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 ABLIM3O94929 683 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 GNSP15586 552 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 HOXD11P31277 338 aaPredicted RBP13.69□□□□□ -0.22
VPS35-210ENST00000568784 SLC3A1Q07837 685 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 TEAD2Q15562 447 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 LIPIQ6XZB0 460 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 GDPGP1Q6ZNW5 385 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 FAM92BQ6ZTR7 304 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 SLC9B2Q86UD5 537 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 SAMD12Q8N8I0 201 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 SPRTNQ9H040 489 aaPredicted RBP13.69□□□□□ -0.22
VPS35-210ENST00000568784 IL21Q9HBE4 155 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 NDUFB11Q9NX14 153 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 HS3ST2Q9Y278 367 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 F5P12259 2224 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 EEF1E1O43324 174 aaKnown RBP13.69□□□□□ -0.22
VPS35-210ENST00000568784 HRO43593 1189 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms