RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CCT3P49368 545 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 PPP2R2DQ66LE6 453 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 FAM92BQ6ZTR7 304 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 IKBIPQ70UQ0 350 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 ANKRD53Q8N9V6 530 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 OR5P2Q8WZ92 322 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 ZNF689Q96CS4 500 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 CITED4Q96RK1 184 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 ZNF607Q96SK3 696 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 FAM83CQ9BQN1 747 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TMED9Q9BVK6 235 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TBC1D17Q9HA65 648 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TMEM39AQ9NV64 488 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 IL36AQ9UHA7 158 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 GPSM3Q9Y4H4 160 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 KIAA1671Q9BY89 1806 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ERVH48-1M5A8F1 160 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 SLC30A4O14863 429 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 FRS3O43559 492 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 PRKRAO75569 313 aaKnown RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 ALX3O95076 343 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 LALBAP00709 142 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ALPPP05187 535 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 SERPIND1P05546 499 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 PTNP21246 168 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 BUD31P41223 144 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 GPLD1P80108 840 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 EFR3AQ14156 821 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 CCDC85BQ15834 202 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 PLK5Q496M5 336 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 LCN1P1Q5VSP4 162 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 TRIQKQ629K1 86 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 RAET1GQ6H3X3 334 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 FAM83HQ6ZRV2 1179 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 PARS2Q7L3T8 475 aaKnown RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 ZNF547Q8IVP9 402 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 TP53I13Q8NBR0 393 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 C19orf18Q8NEA5 215 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 OR7G1Q8NGA0 311 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 CD99L2Q8TCZ2 262 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ZBED6CLQ96FA7 236 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 OR51I1Q9H343 314 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 B3GAT2Q9NPZ5 323 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 MAN2C1Q9NTJ4 1040 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 SRRDQ9UH36 339 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 AKR7A2O43488 359 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 TMPRSS11DO60235 418 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 POP7O75817 140 aaKnown RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 SOD1P00441 154 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 CHRNB1P11230 501 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 SYN1P17600 705 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 UBE3AQ05086 875 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 DBPQ10586 325 aaPredicted RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 IL18Q14116 193 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 GPR19Q15760 415 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ZNF805Q5CZA5 627 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 KHDRBS2Q5VWX1 349 aaKnown RBP12.47□□□□□ -0.41
CLN3-210ENST00000563874 B3GLCTQ6Y288 498 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ZNF730Q6ZMV8 503 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 DPPA4Q7L190 304 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 KIF18BQ86Y91 864 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 DTX3Q8N9I9 347 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 IRF7Q92985 503 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 FUZQ9BT04 418 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ZSCAN32Q9NX65 697 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 ALG5Q9Y673 324 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 OBSL1O75147 1896 aa12.47□□□□□ -0.41
CLN3-210ENST00000563874 PDE9AO76083 593 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 LGI1O95970 557 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 C8AP07357 584 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 TRAPPC2P0DI81 140 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 TRAPPC2BP0DI82 140 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 HTR2BP41595 481 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 MAP2K3P46734 347 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 AVPR1BP47901 424 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 BNC1Q01954 994 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 ARHGEF6Q15052 776 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 ZNF658BQ4V348 819 aaPredicted RBP12.46□□□□□ -0.41
CLN3-210ENST00000563874 ZNF628Q5EBL2 1059 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 HSDL2Q6YN16 418 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 SLA2Q9H6Q3 261 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 CNIH4Q9P003 139 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 SF3B6Q9Y3B4 125 aaKnown RBP12.46□□□□□ -0.41
CLN3-210ENST00000563874 CDH23Q9H251 3354 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 H7BY64 318 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 LILRB5O75023 590 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 BSGP35613 385 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 MLLT3P42568 568 aaPredicted RBP12.46□□□□□ -0.41
CLN3-210ENST00000563874 GAS1P54826 345 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 EIF2B5Q13144 721 aaKnown RBP12.46□□□□□ -0.41
CLN3-210ENST00000563874 PRR23CQ6ZRP0 262 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 DDX53Q86TM3 631 aaKnown RBP12.46□□□□□ -0.41
CLN3-210ENST00000563874 FAM129CQ86XR2 697 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 TBC1D19Q8N5T2 526 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 KLK6Q92876 244 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 UFD1Q92890 307 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 MRGPRX3Q96LB0 322 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 PRAP1Q96NZ9 151 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 GIMAP4Q9NUV9 329 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 IL20RAQ9UHF4 553 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms