RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 C16orf52Q8NHV5 167 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 TMEM125Q96AQ2 219 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 TESCQ96BS2 214 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 COQ8BQ96D53 544 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 SCMH1Q96GD3 660 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 BHLHE41Q9C0J9 482 aaPredicted RBP12.04□□□□□ -0.48
NEDD8-208ENST00000560427 EPN3Q9H201 632 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 GLIPR2Q9H4G4 154 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 NEUROD4Q9HD90 331 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 SLCO1B3Q9NPD5 702 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 AIG1Q9NVV5 245 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 HPF1Q9NWY4 346 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 TAS2R9Q9NYW1 312 aa12.04□□□□□ -0.48
NEDD8-208ENST00000560427 TNRC6AQ8NDV7 1962 aaKnown RBP12.04□□□□□ -0.48
NEDD8-208ENST00000560427 TTC36A6NLP5 189 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 CAPN14A8MX76 684 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF195O14628 629 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 SLC28A2O43868 658 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 IDO1P14902 403 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 GPX3P22352 226 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 NRG3P56975 720 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 IRX1P78414 480 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 MRPS35P82673 323 aaKnown RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 GSTA3Q16772 222 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 PRSS53Q2L4Q9 553 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF385BQ569K4 471 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF766Q5HY98 468 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 FHL5Q5TD97 284 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ANKRD26P1Q6NSI1 321 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 EPGNQ6UW88 154 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 RTL4Q6ZR62 310 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ACAD11Q709F0 780 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 MAVSQ7Z434 540 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF605Q86T29 641 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 FAM98AQ8NCA5 519 aaKnown RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ADIPOR1Q96A54 375 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 BTBD9Q96Q07 612 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 DPY30Q9C005 99 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 WDR55Q9H6Y2 383 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 TIMMDC1Q9NPL8 285 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 DDX18Q9NVP1 670 aaKnown RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 ANKRD10Q9NXR5 420 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 BCAP29Q9UHQ4 241 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 KLF13Q9Y2Y9 288 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-208ENST00000560427 CFAP46Q8IYW2 2715 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 KALRNO60229 2985 aa12.03□□□□□ -0.48
NEDD8-208ENST00000560427 GOLGA8QA0A0J9YX86 632 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 GOLGA8OA6NCC3 632 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 FRG2CA6NGY1 282 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 GOLGA8NF8WBI6 632 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 ANKRD28O15084 1053 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 TO15178 435 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 POLR3GO15318 223 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 NME2P1O60361 137 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 EDF1O60869 148 aaKnown RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 DIAPH2O60879 1101 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 OR6B1O95007 311 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 PSMG1O95456 288 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 NADKO95544 446 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 F10P00742 488 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SP1P08047 785 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 NAGAP17050 411 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 DRD5P21918 477 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 NME2P22392 152 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 GPC1P35052 558 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SOX3P41225 446 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 MC3RP41968 323 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 PPICP45877 212 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 EMDP50402 254 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 MANFP55145 182 aaKnown RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SRSF11Q05519 484 aaKnown RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 HSPB3Q12988 150 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 DUSP8Q13202 625 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 LSM12Q3MHD2 195 aaKnown RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SLC9B1Q4ZJI4 515 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 ZNF468Q5VIY5 522 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SPINK14Q6IE38 97 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SLC25A25Q6KCM7 469 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 TMEM107Q6UX40 140 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 FAM47EQ6ZV65 393 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 GLB1L3Q8NCI6 653 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 OR7G2Q8NG99 324 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 OR7A2PQ8NGA2 310 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 OR8J2Q8NGG1 315 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 PSMA8Q8TAA3 256 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 DOK4Q8TEW6 326 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 OR5P2Q8WZ92 322 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 KAT2AQ92830 837 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 CIDECQ96AQ7 238 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SPACA9Q96E40 222 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 ELP4Q96EB1 424 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 HSPBAP1Q96EW2 488 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 LCORQ96JN0 433 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 VSTM2LQ96N03 204 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 SIGLEC12Q96PQ1 595 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 CCDC134Q9H6E4 229 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 AGPAT4Q9NRZ5 378 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 NTMQ9P121 344 aa12.02□□□□□ -0.49
NEDD8-208ENST00000560427 C19orf53Q9UNZ5 99 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-208ENST00000560427 ERVK-11Q9UQG0 969 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms