RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	PELI2	Q9HAT8	420 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	GPR35	Q9HC97	309 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	KCNK9	Q9NPC2	374 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	SEMA4B	Q9NPR2	832 aa	Predicted RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	VSX1	Q9NZR4	365 aa	Predicted RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	TMEM216	Q9P0N5	145 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	CTSF	Q9UBX1	484 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	TES	Q9UGI8	421 aa	Known RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	C3orf18	Q9UK00	162 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	ING1	Q9UK53	422 aa	Predicted RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	PTBP2	Q9UKA9	531 aa	Known RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	MRPS2	Q9Y399	296 aa	Known RBP	4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	RNF11	Q9Y3C5	154 aa		4.38	□□□□□ -1.71
ATXN3-238	ENST00000556288	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	NBEA	Q8NFP9	2946 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	KCNE1B	A0A087WTH5	132 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	IGHV3-20	A0A0C4DH32	117 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	WDR91	A4D1P6	747 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	FAM227A	F5H4B4	570 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CYR61	O00622	381 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ERI3	O43414	337 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CHST10	O43529	356 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	DNAJB6	O75190	326 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	VPS4B	O75351	444 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ERLIN1	O75477	346 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	JRK	O75564	520 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ZFPL1	O95159	310 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CLDN9	O95484	217 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CHEK2	O96017	543 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	IGHE	P01854	428 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	IFNA16	P05015	189 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CAPN1	P07384	714 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GSTA1	P08263	222 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ABHD2	P08910	425 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	MYL2	P10916	166 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ITGAM	P11215	1152 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SFTPC	P11686	197 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ALOX12	P18054	663 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	KRT4	P19013	534 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	NR1D1	P20393	614 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GCA	P28676	217 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	AHR	P35869	848 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GGT5	P36269	586 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SLC26A3	P40879	764 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	XCR1	P46094	333 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SLC6A12	P48065	614 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CDH13	P55290	713 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	STXBP1	P61764	594 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SKP1	P63208	163 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	POU6F2	P78424	691 aa	Predicted RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	PHEX	P78562	749 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TGM3	Q08188	693 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SLC13A2	Q13183	592 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	HERC3	Q15034	1050 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	PRTG	Q2VWP7	1150 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	LINC00303	Q3SY05	128 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	KRT71	Q3SY84	523 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TECRL	Q5HYJ1	363 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CDKL4	Q5MAI5	379 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ABHD17B	Q5VST6	288 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GARNL3	Q5VVW2	1013 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ATG9B	Q674R7	924 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	MED27	Q6P2C8	311 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TRIM40	Q6P9F5	258 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	FAM198B	Q6UWH4	519 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ASB18	Q6ZVZ8	466 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	OVCH2	Q7RTZ1	564 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	LRRC70	Q7Z2Q7	622 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GOLGA7	Q7Z5G4	137 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	VN1R4	Q7Z5H5	301 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SRRM1	Q8IYB3	904 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	EXD3	Q8N9H8	876 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TEX19	Q8NA77	164 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288		Q8NA96	180 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	CLEC1A	Q8NC01	280 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ABHD11	Q8NFV4	315 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	MYRIP	Q8NFW9	859 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	OR4K1	Q8NGD4	311 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	OR5T3	Q8NGG3	340 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	OR2Y1	Q8NGV0	311 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	RHEBL1	Q8TAI7	183 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	C9orf43	Q8TAL5	461 aa	Predicted RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	UTP15	Q8TED0	518 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TRPC4AP	Q8TEL6	797 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	ASB10	Q8WXI3	467 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	THAP4	Q8WY91	577 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	UBE2E3	Q969T4	207 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TMEM125	Q96AQ2	219 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	C8orf44	Q96CB5	159 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	TM4SF19	Q96DZ7	209 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	PTCD3	Q96EY7	689 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	THOC3	Q96J01	351 aa	Known RBP	4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	C10orf90	Q96M02	699 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	FER1L6-AS2	Q96M78	137 aa		4.37	□□□□□ -1.71
ATXN3-238	ENST00000556288	GPR78	Q96P69	363 aa		4.37	□□□□□ -1.71

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