RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	ITPA	Q9BY32	194 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	HDAC8	Q9BY41	377 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	NUAK2	Q9H093	628 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PAQR5	Q9NXK6	330 aa	Predicted RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	EHD3	Q9NZN3	535 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PRELID1	Q9Y255	219 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	POFUT2	Q9Y2G5	429 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ATG4B	Q9Y4P1	393 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286		A0A1W2PQU0	124 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286		H3BN98	237 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	LRRTM2	O43300	516 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	MED26	O95402	600 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	CDK1	P06493	297 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ANXA8	P13928	327 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	TNNI3	P19429	210 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	CBL	P22681	906 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	AK4	P27144	223 aa	Predicted RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	CERS1	P27544	350 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	UGT2B10	P36537	528 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	LIMS1	P48059	325 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	NCBP2	P52298	156 aa	Known RBP eCLIP	13.95	□□□□□ -0.18	3e-7	■□□□□ 10.4
DDX55-209	ENST00000542286	PRKCD	Q05655	676 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	RBBP4	Q09028	425 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	LASP1	Q14847	261 aa	Known RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	PAQR6	Q6TCH4	344 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	OR52E1	Q8NGJ3	308 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	RASSF5	Q8WWW0	418 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	NEURL3	Q96EH8	262 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	MYADM	Q96S97	322 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	CDADC1	Q9BWV3	514 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	RERGL	Q9H628	205 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	THSD1	Q9NS62	852 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	CLEC2D	Q9UHP7	191 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	C5orf67	F2Z3F1	127 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	DSCR3	O14972	297 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ATXN8OS	P0DMR3	200 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	VASP	P50552	380 aa	Predicted RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	PCBP4	P57723	403 aa	Known RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	REEP5	Q00765	189 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	UBE3A	Q05086	875 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	HEPACAM	Q14CZ8	416 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	PTCHD4	Q6ZW05	846 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	NUDT13	Q86X67	352 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	APOBEC4	Q8WW27	367 aa	Known RBP	13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ST6GAL2	Q96JF0	529 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	RHBG	Q9H310	441 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC6A20	Q9NP91	592 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	AHSP	Q9NZD4	102 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	SEC14L3	Q9UDX4	400 aa		13.95	□□□□□ -0.18
DDX55-209	ENST00000542286	ZSCAN5B	A6NJL1	495 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ENTPD6	O75354	484 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ARMCX4	Q5H9R4	360 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	FAM46C	Q5VWP2	391 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	OR4C11	Q6IEV9	310 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	TMEM107	Q6UX40	140 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC7A13	Q8TCU3	470 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	SEMA3G	Q9NS98	782 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	PNMA8C	A0A1B0GUJ8	204 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	LRIT2	A6NDA9	550 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	POM121B	A6NF01	834 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	WWP2	O00308	870 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	DNAJB6	O75190	326 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	CEACAM5	P06731	702 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ERG	P11308	486 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	PEBP1	P30086	187 aa	Known RBP	13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	LBX1	P52954	281 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	PPP2CB	P62714	309 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	PPP2CA	P67775	309 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	SLAMF1	Q13291	335 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	LTB4R	Q15722	352 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	FRMPD2B	Q6IN97	320 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ZNF770	Q6IQ21	691 aa	Predicted RBP	13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	SFTPA2	Q8IWL1	248 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	CREB3L4	Q8TEY5	395 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	OR5P2	Q8WZ92	322 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	RGMA	Q96B86	450 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	GPA33	Q99795	319 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	WASH6P	Q9NQA3	447 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	C14orf119	Q9NWQ9	140 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	FTSJ1	Q9UET6	329 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286		A0A1W2PR48	441 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	EPPIN	O95925	133 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	RHCE	P18577	417 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ELAVL4	P26378	380 aa	Known RBP	13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	IFNA8	P32881	189 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	CRISP1	P54107	249 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	MADCAM1	Q13477	382 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	LYPD8	Q6UX82	237 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	YAF2	Q8IY57	180 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	TMEFF1	Q8IYR6	380 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	OR4E2	Q8NGC2	313 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	MTERF3	Q96E29	417 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	TEX101	Q9BY14	249 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	FGF22	Q9HCT0	170 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	CCNB1IP1	Q9NPC3	277 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	MAPRE3	Q9UPY8	281 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	ICK	Q9UPZ9	632 aa		13.94	□□□□□ -0.18
DDX55-209	ENST00000542286	NTNG1	Q9Y2I2	539 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms