RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 EIF2B2P49770 351 aaKnown RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 ANKDD1AQ495B1 522 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 PDZK1Q5T2W1 519 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 POMZP3Q6PJE2 187 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 USP43Q70EL4 1123 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 RNF44Q7L0R7 432 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CSNK1A1LQ8N752 337 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 LINC01555Q8NAE3 123 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 OR52E4Q8NGH9 312 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 UCN3Q969E3 161 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 LRR1Q96L50 414 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ZNF354BQ96LW1 612 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 RBM38Q9H0Z9 239 aaKnown RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 TMEM38AQ9H6F2 299 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ACTR10Q9NZ32 417 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CNIH4Q9P003 139 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ENPP5Q9UJA9 477 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ARID1BQ8NFD5 2236 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 FAM25AB3EWG3 89 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 FAM25CB3EWG5 89 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 FAM25GB3EWG6 89 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 KCNJ13O60928 360 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 TNFRSF21O75509 655 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ADAP00813 363 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 OSMP13725 252 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 HOXB3P14651 431 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 CHMP24386 653 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 GABRA3P34903 492 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 TNFRSF4P43489 277 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 GPR4P46093 362 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CHRNEQ04844 493 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 DNASE1L3Q13609 305 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 NFATC4Q14934 902 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 TRAM2Q15035 370 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CRTC2Q53ET0 693 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 HLA-DQA1Q5Y7H0 255 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ABHD17CQ6PCB6 329 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ZC3H14Q6PJT7 736 aaKnown RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 DENND6BQ8NEG7 585 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 LMX1AQ8TE12 382 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 FAM3CQ92520 227 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ABHD8Q96I13 439 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 C1QTNF2Q9BXJ5 285 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ACSS1Q9NUB1 689 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 CRNNQ9UBG3 495 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 ZNF639Q9UID6 485 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CD207Q9UJ71 328 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CABIN1Q9Y6J0 2220 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 NPIPA5A0A0B4J1W7 369 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 A0A1W2PR48 441 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 NPIPA7E9PJI5 369 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 SEC14L2O76054 403 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 NPIPA8P0DM63 369 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 F3P13726 295 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 JUNDP17535 347 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 DRD1P21728 446 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 EIF2DP41214 584 aaKnown RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 ZNF404Q494X3 552 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 SYCE2Q6PIF2 218 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 PRR23CQ6ZRP0 262 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 VRK2Q86Y07 508 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 SNX29P2Q8IUI4 249 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 GALNT12Q8IXK2 581 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 GJD3Q8N144 294 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 IL17RCQ8NAC3 791 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 PJA1Q8NG27 643 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 C9orf43Q8TAL5 461 aaPredicted RBP9.59□□□□□ -0.87
MCF2-209ENST00000520602 GGHQ92820 318 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 MUL1Q969V5 352 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ELSPBP1Q96BH3 223 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CRELD1Q96HD1 420 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 HRASLS5Q96KN8 279 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 SPACA7Q96KW9 195 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 TEX101Q9BY14 249 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ABCB9Q9NP78 766 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 POLE4Q9NR33 117 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 ICKQ9UPZ9 632 aa9.59□□□□□ -0.87
MCF2-209ENST00000520602 CASKO14936 926 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 TMCC2O75069 709 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 ENTPD6O75354 484 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 PRSS23O95084 383 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 SNX4O95219 450 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 ZNF12P17014 697 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 PTPN6P29350 595 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 PKLRP30613 574 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 CSTF2P33240 577 aaKnown RBP eCLIP9.58□□□□□ -0.88
MCF2-209ENST00000520602 PODNL1Q6PEZ8 512 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 SHFQ7M4L6 423 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 CENPSQ8N2Z9 138 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 OR8J1Q8NGP2 316 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 FAR1Q8WVX9 515 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 FAM46AQ96IP4 442 aaKnown RBP9.58□□□□□ -0.88
MCF2-209ENST00000520602 IFT27Q9BW83 186 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 ACER3Q9NUN7 267 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 FNDC1Q4ZHG4 1894 aaPredicted RBP9.58□□□□□ -0.88
MCF2-209ENST00000520602 SH3PXD2BA1X283 911 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 C5orf67F2Z3F1 127 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 GTPBP1O00178 669 aaKnown RBP9.58□□□□□ -0.88
MCF2-209ENST00000520602 DNAJB5O75953 348 aa9.58□□□□□ -0.88
MCF2-209ENST00000520602 IGFBP1P08833 259 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms