RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PLD5Q8N7P1 536 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 RASGEF1AQ8N9B8 481 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CCNYQ8ND76 341 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 SGMS2Q8NHU3 365 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 GDAP1Q8TB36 358 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HMGCLL1Q8TB92 370 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 TFB1MQ8WVM0 346 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 ASB5Q8WWX0 329 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HSPH1Q92598 858 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 EME1Q96AY2 570 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 C12orf66Q96MD2 445 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NSMCE3Q96MG7 304 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 ZNF285Q96NJ3 590 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 COPS8Q99627 209 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 MAP3K3Q99759 626 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 TMEM204Q9BSN7 226 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 FICDQ9BVA6 458 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 SF3B5Q9BWJ5 86 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 GATA5Q9BWX5 397 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 RAB6CQ9H0N0 254 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CLK4Q9HAZ1 481 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 TXLNGQ9NUQ3 528 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 BEX4Q9NWD9 120 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 IFT80Q9P2H3 777 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 SLC23A2Q9UGH3 650 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 SLC39A10Q9ULF5 831 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NFU1Q9UMS0 254 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 MRPS2Q9Y399 296 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 L3MBTL1Q9Y468 752 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 DTNAQ9Y4J8 743 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NCOA6Q14686 2063 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 TENM1Q9UKZ4 2725 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PIKFYVEQ9Y2I7 2098 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 HRNRQ86YZ3 2850 aaPredicted RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 TRBV5-4A0A0C4DH59 114 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 A0A0J9YY10 115 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 GXYLT2A0PJZ3 443 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 OR6C74A6NCV1 312 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 VSTM2BA6NLU5 285 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 OR52A4PA6NMU1 304 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TMEM150CB9EJG8 249 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 PFDN6O15212 129 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 ZNF749O43361 778 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 MFSD11O43934 449 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 SRP72O76094 671 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 BMP10O95393 424 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 GAS8O95995 478 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 F10P00742 488 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 SERPINA7P05543 415 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 RFPL3SP0C7P2 107 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FAM157CP0CG43 387 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 ATP1B2P14415 290 aaPredicted RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 PKMP14618 531 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 PVRP15151 417 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 KDELR1P24390 212 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 GNALP38405 381 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 CETN2P41208 172 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 HSPA7P48741 367 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 RAB28P51157 221 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 KPNA2P52292 529 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 NR1H2P55055 460 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 DLX5P56178 289 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 P2RX3P56373 397 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FOXL2P58012 376 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TAS2R50P59544 299 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 NANOS2P60321 138 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 SKP1P63208 163 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FAM53BQ14153 422 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 SLC18A3Q16572 532 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TUBB8Q3ZCM7 444 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FAM174BQ3ZCQ3 159 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 NKAIN1Q4KMZ8 207 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TFDP3Q5H9I0 405 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 PIK3CD-AS1Q5SR53 167 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 HEPHL1Q6MZM0 1159 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TMEM88Q6PEY1 159 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TTC23LQ6PF05 361 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TMEM220Q6QAJ8 160 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 UNC5DQ6UXZ4 953 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 MEPCEQ7L2J0 689 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 NDUFAF7Q7L592 441 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 LINC00523Q86TU6 105 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TRIM74Q86UV6 250 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 LUZP1Q86V48 1076 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 LRRC6Q86X45 466 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 DOLPP1Q86YN1 238 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 RCOR2Q8IZ40 523 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 CLYBLQ8N0X4 340 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TTC30BQ8N4P2 665 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 CPSF7Q8N684 471 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 PQLC3Q8N755 202 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 POGLUT1Q8NBL1 392 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 SLC38A9Q8NBW4 561 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 MYRIPQ8NFW9 859 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 OR52N4Q8NGI2 321 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 OR5K2Q8NHB8 316 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 LILRB4Q8NHJ6 448 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 P3H4Q92791 437 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 EID2BQ96D98 161 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 RBM41Q96IZ5 413 aaKnown RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms