RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 DESI1Q6ICB0 168 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 CTAGE4Q8IX94 777 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 CLYBLQ8N0X4 340 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 VWA5B2Q8N398 1253 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 C1orf52Q8N6N3 182 aaKnown RBP19.75■□□□□ 0.75
USP40-215ENST00000484528 ADCY4Q8NFM4 1077 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 BCAP29Q9UHQ4 241 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 CES1P1Q9UKY3 287 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 SNX6Q9UNH7 406 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 MTORP42345 2549 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 DOCK7Q96N67 2140 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 ANKRD33BA6NCL7 494 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 GOLGA6L10A6NI86 522 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 GNB5O14775 395 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 SNRPAP09012 282 aaKnown RBP19.74■□□□□ 0.75
USP40-215ENST00000484528 ABCD3P28288 659 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 TOMM20Q15388 145 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 LTB4RQ15722 352 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 PRICKLE4Q2TBC4 344 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 RIPPLY2Q5TAB7 128 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 SEM1Q6ZVN7 128 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 CDYL2Q8N8U2 506 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 MNS1Q8NEH6 495 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 OR7G1Q8NGA0 311 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 TM4SF18Q96CE8 201 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 GNRHR2Q96P88 292 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 ITPAQ9BY32 194 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 ANGPTL4Q9BY76 406 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 MAT2BQ9NZL9 334 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 KCNN3Q9UGI6 736 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 TRPS1Q9UHF7 1281 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 SLC6A5Q9Y345 797 aa19.74■□□□□ 0.75
USP40-215ENST00000484528 MPDZO75970 2070 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 GUCY1B2O75343 617 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 KRT15P19012 456 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 CASP3P42574 277 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 CLCQ05315 142 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 CRYZQ08257 329 aaKnown RBP19.73■□□□□ 0.75
USP40-215ENST00000484528 MGAT2Q10469 447 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 PACS2Q86VP3 889 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 MYRIPQ8NFW9 859 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 NRGNQ92686 78 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 C1QTNF3Q9BXJ4 246 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 BRF2Q9HAW0 419 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 RYDENQ9NUL5 291 aaKnown RBP19.73■□□□□ 0.75
USP40-215ENST00000484528 EHD3Q9NZN3 535 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 TMEM216Q9P0N5 145 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 NFU1Q9UMS0 254 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 C15orf41Q9Y2V0 281 aa19.73■□□□□ 0.75
USP40-215ENST00000484528 SETD2Q9BYW2 2564 aaPredicted RBP19.73■□□□□ 0.75
USP40-215ENST00000484528 FAM47E-STBD1D6RA91 191 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 MANBAO00462 879 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 SUPT7LO94864 414 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 CHN1P15882 459 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 CSNK2A2P19784 350 aaPredicted RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 GCAP28676 217 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 HSD17B3P37058 310 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 CDK9P50750 372 aaKnown RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 MRPS35P82673 323 aaKnown RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 SLC25A35Q3KQZ1 300 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 ACSF3Q4G176 576 aaPredicted RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 EIPR1Q53HC9 387 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 UNC50Q53HI1 259 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 NAXEQ8NCW5 288 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 TNIP2Q8NFZ5 429 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 CNRIP1Q96F85 164 aaPredicted RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 TMEM237Q96Q45 408 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 SECISBP2Q96T21 854 aaKnown RBP19.72■□□□□ 0.75
USP40-215ENST00000484528 TIMP4Q99727 224 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 UBQLN3Q9H347 655 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 METTL7AQ9H8H3 244 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 PLLPQ9Y342 182 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 L3MBTL1Q9Y468 752 aa19.72■□□□□ 0.75
USP40-215ENST00000484528 C2orf72A6NCS6 295 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 PPM1BO75688 479 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 SNX4O95219 450 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ZWINTO95229 277 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ESRRBO95718 433 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 CBX7O95931 251 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ATP1B1P05026 303 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 HPNP05981 417 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ABCB1P08183 1280 aaPredicted RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 TAC1P20366 129 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 SOX18P35713 384 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 HTR6P50406 440 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 RPP38P78345 283 aaKnown RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 MAP4K2Q12851 820 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 TESK1Q15569 626 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 GLE1Q53GS7 698 aaKnown RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 TRMT12Q53H54 448 aaKnown RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 WIPI1Q5MNZ9 446 aaPredicted RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 DCST1Q5T197 706 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 CES4AQ5XG92 561 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ANGPTL8Q6UXH0 198 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 ZZZ3Q8IYH5 903 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 RELL2Q8NC24 303 aaPredicted RBP19.71■□□□□ 0.75
USP40-215ENST00000484528 C17orf47Q8NEP4 570 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 OR52R1Q8NGF1 315 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 NODALQ96S42 347 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 FAIM2Q9BWQ8 316 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms