RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	ZNF267	Q14586	743 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ARL13A	Q5H913	290 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	SH2D4B	Q5SQS7	431 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	SLC22A10	Q63ZE4	541 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ZNF585A	Q6P3V2	769 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	FGD2	Q7Z6J4	655 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	DDIAS	Q8IXT1	998 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ST13P4	Q8IZP2	240 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	TAGAP	Q8N103	731 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	LIX1	Q8N485	282 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	OR5M9	Q8NGP3	310 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	CDC26	Q8NHZ8	85 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ANKRD9	Q96BM1	317 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	APIP	Q96GX9	242 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	JSRP1	Q96MG2	331 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	DMRTA2	Q96SC8	542 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	IL1RL2	Q9HB29	575 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	DEPP	Q9NTK1	212 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	TEX10	Q9NXF1	929 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ALKBH4	Q9NXW9	302 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ACAD8	Q9UKU7	415 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	BOK	Q9UMX3	212 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ERVK-19	Q9WJR5	959 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643		A0A0G2JMM0	328 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	ATP6AP2	A0A1C7CYW4	349 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643		A0A1W2PPB8	328 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643		A0A1W2PRS3	328 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	TMEM200C	A6NKL6	621 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	KIR3DP1	A8MWS1	328 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	ATP6AP2	O75787	350 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	HSPA4L	O95757	839 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	GPR75	O95800	540 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	CHRNG	P07510	517 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MAGEA5	P43359	124 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MAN2A2	P49641	1150 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	PPP2R2A	P63151	447 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	PMPCA	Q10713	525 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MPP2	Q14168	576 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	CHI3L2	Q15782	390 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MPEG1	Q2M385	716 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	DND1	Q8IYX4	353 aa	Known RBP	13.96	□□□□□ -0.17
VARS-223	ENST00000474643	OR4K14	Q8NGD5	310 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	NUBPL	Q8TB37	319 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	RAB3IL1	Q8TBN0	382 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MGARP	Q8TDB4	240 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	ZNF721	Q8TF20	911 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	LURAP1	Q96LR2	239 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	EBPL	Q9BY08	206 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	TNFRSF12A	Q9NP84	129 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	KCNJ16	Q9NPI9	418 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	PFDN4	Q9NQP4	134 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	B4GALT7	Q9UBV7	327 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	MCM8	Q9UJA3	840 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	PSME2	Q9UL46	239 aa		13.96	□□□□□ -0.17
VARS-223	ENST00000474643	C1orf226	A1L170	272 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SERTM1	A2A2V5	107 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	PINLYP	A6NC86	204 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	OR14I1	A6ND48	311 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	WASHC1	A8K0Z3	465 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	CAPN14	A8MX76	684 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	C19orf84	I3L1E1	186 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	PGRMC2	O15173	223 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SEC22B	O75396	215 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	ERAL1	O75616	437 aa	Known RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	ANXA4	P09525	319 aa	Predicted RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	CCL3	P10147	92 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	TIA1	P31483	386 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	TRA2B	P62995	288 aa	Known RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SLC10A1	Q14973	349 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	PIGG	Q5H8A4	983 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	WLS	Q5T9L3	541 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	PRAMEF20	Q5VT98	475 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	CHERP	Q8IWX8	916 aa	Known RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	C9orf40	Q8IXQ3	194 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	CLYBL	Q8N0X4	340 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	TMEM251	Q8N6I4	163 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	DOK4	Q8TEW6	326 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	UCN3	Q969E3	161 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SARAF	Q96BY9	339 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	TM4SF18	Q96CE8	201 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SPACA9	Q96E40	222 aa	Predicted RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	ITGB1BP2	Q9UKP3	347 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	TRAF6	Q9Y4K3	522 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	ZNF780B	Q9Y6R6	833 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.95	□□□□□ -0.18
VARS-223	ENST00000474643	PCNX1	Q96RV3	2341 aa		13.95	□□□□□ -0.18
VARS-223	ENST00000474643	OR6C76	A6NM76	312 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	ADAM10	O14672	748 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	TP53I11	O14683	189 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	RSL1D1	O76021	490 aa	Known RBP	13.94	□□□□□ -0.18
VARS-223	ENST00000474643	SERPINE1	P05121	402 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	IL3	P08700	152 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	LINC00032	P0C843	101 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	NT5E	P21589	574 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	ACVR2A	P27037	513 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	PIGA	P37287	484 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	TMED10	P49755	219 aa	Known RBP	13.94	□□□□□ -0.18
VARS-223	ENST00000474643	XK	P51811	444 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	NRG3	P56975	720 aa		13.94	□□□□□ -0.18
VARS-223	ENST00000474643	IGLV3-21	P80748	117 aa	Predicted RBP	13.94	□□□□□ -0.18

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