RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ZNF99A8MXY4 864 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 B4DGG1 531 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 FOXE1O00358 373 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 HMGN4O00479 90 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TNFRSF21O75509 655 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 ALOX12P18054 663 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 MAT1AQ00266 395 aaKnown RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 CHRNEQ04844 493 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SF3B4Q15427 424 aaKnown RBP eCLIP7.9□□□□□ -1.14
CD44-208ENST00000428726 KDM4DQ6B0I6 523 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TRIM40Q6P9F5 258 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TRIM48Q8IWZ4 208 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SLC34A3Q8N130 599 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 POC5Q8NA72 575 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SLC16A11Q8NCK7 471 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 RAB2BQ8WUD1 216 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 MS4A8Q9BY19 250 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 BHLHE41Q9C0J9 482 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 ACER3Q9NUN7 267 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SCN3BQ9NY72 215 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 ZNF624Q9P2J8 865 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 BOLA1Q9Y3E2 137 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 A0A1B0GVC2 190 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 A6NIN4 97 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 C17orf51A8MQB3 221 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 A8MUA0 341 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 RNASET2O00584 256 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 MAGEB4O15481 346 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 RGS5O15539 181 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 P2RX6O15547 441 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 RGS10O43665 173 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CTSVO60911 334 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 SULT1C4O75897 302 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OXSR1O95747 527 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 AIFM1O95831 613 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 RECKO95980 971 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 POU2F2P09086 479 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CCDC159P0C7I6 412 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 PEPDP12955 493 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 NDUFV2P19404 249 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TCEA1P23193 301 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 RPL3P39023 403 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 GPR4P46093 362 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 KCNC4Q03721 635 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 RPE65Q16518 533 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 IQCCQ4KMZ1 466 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TRMT12Q53H54 448 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 MLIPQ5VWP3 458 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OR4C11Q6IEV9 310 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TMEM53Q6P2H8 277 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ARMC8Q8IUR7 673 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TMEM151BQ8IW70 566 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 LAS2Q8IYD9 372 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 GATSQ8NAP1 163 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 LZICQ8WZA0 190 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 SMPDL3AQ92484 453 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 FKBP10Q96AY3 582 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 LINC00615Q96LM1 132 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 CENPOQ9BU64 300 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 GPR174Q9BXC1 333 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MFRPQ9BY79 579 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MTIF3Q9H2K0 278 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 SRMSQ9H3Y6 488 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ZNF556Q9HAH1 456 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ATAD3AQ9NVI7 634 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ATP6V1HQ9UI12 483 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 HSPE1-MOB4S4R3N1 261 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 A0A1W2PQF6 199 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 LRIT2A6NDA9 550 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 KMOO15229 486 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CAPN5O15484 640 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 DPM1O60762 260 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ENTPD6O75354 484 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 DNAJB5O75953 348 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 SPNP16150 400 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 STXBP1P61764 594 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 DPTQ07507 201 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 DMPKQ09013 629 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 KEAP1Q14145 624 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TEAD4Q15561 434 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 POMZP3Q6PJE2 187 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 GATAD2AQ86YP4 633 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 B3GNT7Q8NFL0 401 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OR13H1Q8NG92 308 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 WDR36Q8NI36 951 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 SLC7A13Q8TCU3 470 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 FBLIM1Q8WUP2 373 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 GGHQ92820 318 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ZNF566Q969W8 418 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 DMRTB1Q96MA1 342 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 BEX2Q9BXY8 128 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 KCMF1Q9P0J7 381 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CLEC1BQ9P126 229 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MALT1Q9UDY8 824 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 GPR34Q9UPC5 381 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TMA7Q9Y2S6 64 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 PCDHGA4Q9Y5G9 962 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CACNA1GO43497 2377 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TFECO14948 347 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 ZW10O43264 779 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms