RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 JRKO75564 520 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PRSS56P0CW18 603 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 FNTBP49356 437 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 VEZF1Q14119 521 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 NTRK2Q16620 822 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 UAP1L1Q3KQV9 507 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PDSS1Q5T2R2 415 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM225Q6GV28 225 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 METTL2BQ6P1Q9 378 aaKnown RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ZNF584Q8IVC4 421 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 SLC15A4Q8N697 577 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 GPR150Q8NGU9 434 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 OR8S1Q8NH09 359 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 NELL2Q99435 816 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PELOQ9BRX2 385 aaKnown RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 LHPPQ9H008 270 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 SRA1Q9HD15 236 aaKnown RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ACOT13Q9NPJ3 140 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ZDHHC7Q9NXF8 308 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM181Q9P2C4 612 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 KCNIP3Q9Y2W7 256 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 HYKKA2RU49 373 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 F5H0A9 414 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PTTG1O95997 202 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 OSMP13725 252 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CD40LGP29965 261 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TAS2R38P59533 333 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ACTA2P62736 377 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ACTG2P63267 376 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CRYZQ08257 329 aaKnown RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ARHGAP11AQ6P4F7 1023 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 KDELC1Q6UW63 502 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TSPAN33Q86UF1 283 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ADGRG5Q8IZF4 528 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ARFGAP1Q8N6T3 406 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 OR7G3Q8NG95 312 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CD200R1Q8TD46 325 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 APIPQ96GX9 242 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 MYNNQ9NPC7 610 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 IL26Q9NPH9 171 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM184CQ9NVA4 438 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 EPHA6Q9UF33 1036 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 FBXL3Q9UKT7 428 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 GKN3PP0CG01 181 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ADORA3P0DMS8 318 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PORP16435 677 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ADH7P40394 386 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 DHPSP49366 369 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 RAB28P51157 221 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CTBP2P56545 445 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CDK5R2Q13319 367 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM107Q6UX40 140 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 LRRC69Q6ZNQ3 347 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 HMGN2P46Q86SG4 172 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 LRRTM3Q86VH5 581 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 APCDD1Q8J025 514 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CBARPQ8N350 705 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 GATSQ8NAP1 163 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 FIBINQ8TAL6 211 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 NETO1Q8TDF5 533 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 TMIGD2Q96BF3 282 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 RHBDF1Q96CC6 855 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 OR4K3Q96R72 315 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 NPLQ9BXD5 320 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 KCNK13Q9HB14 408 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ASB6Q9NWX5 421 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PLCL2Q9UPR0 1127 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 SIPA1L3O60292 1781 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 A0A1W2PQU0 124 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 MYADML2A6NDP7 307 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 MRPS14O60783 128 aaKnown RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 BCAS1O75363 584 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 HNRNPA1P09651 372 aaKnown RBP eCLIP10.89□□□□□ -0.67
PTPRF-203ENST00000372407 H2AFB2P0C5Z0 115 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PHF19Q5T6S3 580 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ZNF283Q8N7M2 679 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ZFP41Q8N8Y5 198 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 PROKR1Q8TCW9 393 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 MAL2Q969L2 176 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 IL23AQ9NPF7 189 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 NANSQ9NR45 359 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 FAIMQ9NVQ4 179 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CLEC4EQ9ULY5 219 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 CD8B2A6NJW9 211 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 PLD2O14939 933 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 TOXO94900 526 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 RPS17P08708 135 aaKnown RBP10.88□□□□□ -0.67
PTPRF-203ENST00000372407 CD8BP10966 210 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 IL4RP24394 825 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 AIMP2Q13155 320 aaKnown RBP10.88□□□□□ -0.67
PTPRF-203ENST00000372407 GRM2Q14416 872 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 NFE2L1Q14494 772 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 PLEKHN1Q494U1 663 aaPredicted RBP10.88□□□□□ -0.67
PTPRF-203ENST00000372407 CRTC1Q6UUV9 634 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 UBQLNLQ8IYU4 475 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 PNPLA1Q8N8W4 532 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 PAPD5Q8NDF8 572 aaKnown RBP10.88□□□□□ -0.67
PTPRF-203ENST00000372407 OR4C15Q8NGM1 316 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 OR8K5Q8NH50 307 aa10.88□□□□□ -0.67
PTPRF-203ENST00000372407 C16orf78Q8WTQ4 265 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms