RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PTOV1Q86YD1 416 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 PEX5LQ8IYB4 626 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 FAM86B1Q8N7N1 296 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 OR52N2Q8NGI0 321 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 NDNFQ8TB73 568 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 BAHD1Q8TBE0 780 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 ZFYVE21Q9BQ24 234 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 NLNQ9BYT8 704 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 CHST8Q9H2A9 424 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 ACSS1Q9NUB1 689 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 LYARQ9NX58 379 aaKnown RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 TEX10Q9NXF1 929 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 CCDC59Q9P031 241 aaKnown RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 MUTYHQ9UIF7 546 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 CARD8Q9Y2G2 431 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 ASB4Q9Y574 426 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 C4orf51C9J302 202 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 BCAT2O15382 392 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 CTSVO60911 334 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 MED26O95402 600 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 C1QCP02747 245 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 FABP3P05413 133 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 CD36P16671 472 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 HOXA6P31267 233 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 CRATP43155 626 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 FASLGP48023 281 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RAB8AP61006 207 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 VBP1P61758 197 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 PIGFQ07326 219 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SIM2Q14190 667 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 MLC1Q15049 377 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 TEAD4Q15561 434 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 INAVAQ3KP66 663 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 MANEAQ5SRI9 462 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLK3-201ENST00000345005 MFSD4BQ5TF39 518 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 ARL14Q8N4G2 192 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 ZNF655Q8N720 491 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 KCT2Q8NC54 265 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 C11orf65Q8NCR3 313 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 CNIH3Q8TBE1 160 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SGCDQ92629 289 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RERGQ96A58 199 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 EXOSC8Q96B26 276 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 CRELD1Q96HD1 420 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 ABCG4Q9H172 646 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RIBC2Q9H4K1 309 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SYNPO2LQ9H987 977 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 NEUROD4Q9HD90 331 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 KIF17Q9P2E2 1029 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RAPGEFL1Q9UHV5 662 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 PEX16Q9Y5Y5 336 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 CCDC163A0A0D9SF12 145 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 AGAP5A6NIR3 686 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 LMO7DNF2Z398 122 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 LOC110117498-PIK3R3F6TDL0 507 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SNPHO15079 494 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 XPNPEP2O43895 674 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 MT-ND2P03891 347 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 ZNF10P21506 573 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 PRKACGP22612 351 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 KDELR2P33947 212 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 PCGF2P35227 344 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SOAT1P35610 550 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 CSNK1EP49674 416 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 CLK3P49761 638 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 AFF3P51826 1226 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 BTN3A2P78410 334 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 IFITM3Q01628 133 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RBBP4Q09028 425 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SUZ12Q15022 739 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 TBCEQ15813 527 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 ANGPTL8Q6UXH0 198 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 TMEM179BQ7Z7N9 219 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 ZBTB46Q86UZ6 589 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 ZNF761Q86XN6 746 aaPredicted RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 P3H2Q8IVL5 708 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 GALNT6Q8NCL4 622 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 UTP15Q8TED0 518 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 PIK3R3Q92569 461 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 RSC1A1Q92681 617 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 PROX1Q92786 737 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 FCRL4Q96PJ5 515 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 EPYCQ99645 322 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 NXF2Q9GZY0 626 aaKnown RBP12.09□□□□□ -0.47
CLK3-201ENST00000345005 DCSTAMPQ9H295 470 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SEMA6CQ9H3T2 930 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 REEP1Q9H902 201 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SLC35C2Q9NQQ7 365 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 KRT84Q9NSB2 600 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 POMT2Q9UKY4 750 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 SNX8Q9Y5X2 465 aa12.09□□□□□ -0.47
CLK3-201ENST00000345005 A0A1W2PR48 441 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 DYRK3O43781 588 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 AIREO43918 545 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 UBXN7O94888 489 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 ZNF888P0CJ79 500 aaPredicted RBP12.08□□□□□ -0.48
CLK3-201ENST00000345005 SMIM10L1P0DMW3 83 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 TYRP1P17643 537 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms