RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C11orf65Q8NCR3 313 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 SLC38A5Q8WUX1 472 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 XAGE5Q8WWM1 108 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 LRTOMTQ8WZ04 291 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 MVB12AQ96EY5 273 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 DCAF13Q9NV06 445 aaKnown RBP18.82■□□□□ 0.6
CLN3-250ENST00000636839 DDX18Q9NVP1 670 aaKnown RBP18.82■□□□□ 0.6
CLN3-250ENST00000636839 MAT2BQ9NZL9 334 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 BMP10O95393 424 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 SLC35E2P0CK97 266 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 ZNF28P17035 718 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 KDELR2P33947 212 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 PTDSS1P48651 473 aaKnown RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 CDK6Q00534 326 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 SCARB2Q14108 478 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 MINDY4Q4G0A6 757 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 FHL5Q5TD97 284 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 MFSD4BQ5TF39 518 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 COX15Q7KZN9 410 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 PPP1R3BQ86XI6 285 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 SAMD14Q8IZD0 417 aaPredicted RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 AMER2Q8N7J2 671 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 AGBL5Q8NDL9 886 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 TSLPQ969D9 159 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 CLIP3Q96DZ5 547 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 DUS3LQ96G46 650 aaKnown RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 TOR4AQ9NXH8 423 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 MRPS33Q9Y291 106 aaKnown RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 COL27A1Q8IZC6 1860 aaPredicted RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 CLDN4O14493 209 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 OR10H2O60403 315 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 BMP2P12643 396 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 PCGF2P35227 344 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 INSM1Q01101 510 aaPredicted RBP18.81■□□□□ 0.6
CLN3-250ENST00000636839 TBCELQ5QJ74 424 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 ZFP1Q6P2D0 407 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 ERICH5Q6P6B1 374 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 OR2L13Q8N349 312 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 SFXN5Q8TD22 340 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 PTCHD1Q96NR3 888 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 SEMA6AQ9H2E6 1030 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 TMEM38AQ9H6F2 299 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 C3orf14Q9HBI5 128 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 CDC14AQ9UNH5 594 aa18.81■□□□□ 0.6
CLN3-250ENST00000636839 FAM149AA5PLN7 773 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 PLOD2O00469 737 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 OPN1SWP03999 348 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 TFPTP0C1Z6 253 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 ARAFP10398 606 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 ITIH1P19827 911 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 PSMA4P25789 261 aaKnown RBP18.8■□□□□ 0.6
CLN3-250ENST00000636839 PRR5P85299 388 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 TRA2AQ13595 282 aaKnown RBP eCLIP18.8■□□□□ 0.6
CLN3-250ENST00000636839 SYPL1Q16563 259 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 LRRC36Q1X8D7 754 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 LPCAT4Q643R3 524 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 RBM44Q6ZP01 1051 aaKnown RBP18.8■□□□□ 0.6
CLN3-250ENST00000636839 AMIGO2Q86SJ2 522 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 PQLC1Q8N2U9 271 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 OR56A1Q8NGH5 318 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 RNF145Q96MT1 663 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 RAD21L1Q9H4I0 556 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 CLK4Q9HAZ1 481 aaKnown RBP18.8■□□□□ 0.6
CLN3-250ENST00000636839 ANAPC2Q9UJX6 822 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 ZFHX2Q9C0A1 2572 aaPredicted RBP18.8■□□□□ 0.6
CLN3-250ENST00000636839 DMXL1Q9Y485 3027 aa18.8■□□□□ 0.6
CLN3-250ENST00000636839 TMEM229AB2RXF0 380 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 POLR1CO15160 346 aaPredicted RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 ZNF682O95780 498 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 BCHEP06276 602 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 IGLV3-21P80748 117 aaPredicted RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 DUSP8Q13202 625 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 VEZF1Q14119 521 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 YOD1Q5VVQ6 348 aaPredicted RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 HMBOX1Q6NT76 420 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 VTCN1Q7Z7D3 282 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 MESP1Q9BRJ9 268 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 SPATA9Q9BWV2 254 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 RSPO3Q9BXY4 272 aaPredicted RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 ADAP2Q9NPF8 381 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 SRPK3Q9UPE1 567 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 NBL1P41271 181 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 MAN2A2P49641 1150 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 HSD17B7P56937 341 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 HMGN2P46Q86SG4 172 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 ANKFN1Q8N957 763 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 SLC16A11Q8NCK7 471 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 CTHRC1Q96CG8 243 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 RBM18Q96H35 190 aaKnown RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 TMEM19Q96HH6 336 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 TACO1Q9BSH4 297 aaKnown RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 CXorf21Q9HAI6 301 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 NTMQ9P121 344 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 RIMS3Q9UJD0 308 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 ANGPTL2Q9UKU9 493 aa18.79■□□□□ 0.6
CLN3-250ENST00000636839 C19orf53Q9UNZ5 99 aaPredicted RBP18.79■□□□□ 0.6
CLN3-250ENST00000636839 FGF5P12034 268 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 S1PR1P21453 382 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 SSTR4P31391 388 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 FUT5Q11128 374 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms