RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 UFD1Q92890 307 aa18.52■□□□□ 0.56
PDLIM3-212ENST00000620787 ABCG4Q9H172 646 aa18.52■□□□□ 0.56
PDLIM3-212ENST00000620787 MRPL17Q9NRX2 175 aaKnown RBP18.52■□□□□ 0.56
PDLIM3-212ENST00000620787 A0A1W2PQ45 241 aaPredicted RBP18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 A0A1W2PQY0 241 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 A0A1W2PRQ8 180 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 LYRM1O43325 122 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 MYCP01106 439 aaPredicted RBP18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 ACP2P11117 423 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 GABRR2P28476 465 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 GABRA5P31644 462 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 LSM11P83369 360 aaKnown RBP eCLIP18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 TAP2Q03519 686 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 COX10Q12887 443 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 ZNF284Q2VY69 593 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 BTBD16Q32M84 506 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 SIGIRRQ6IA17 410 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 CD200R1LQ6Q8B3 271 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 GAREM2Q75VX8 874 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 C6orf120Q7Z4R8 191 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 SLC9B2Q86UD5 537 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 ZNF557Q8N988 423 aaPredicted RBP18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 TTC9Q92623 222 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 TMEM39AQ9NV64 488 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 NLKQ9UBE8 527 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 SEC14L3Q9UDX4 400 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 GSTK1Q9Y2Q3 226 aa18.52■□□□□ 0.55
PDLIM3-212ENST00000620787 WASH3PC4AMC7 463 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 M0R3H8 397 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 MMP20O60882 483 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 CRYZL1O95825 349 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 EPHX1P07099 455 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 PRKAR1AP10644 381 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 DDCP20711 480 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 CD79BP40259 229 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 MANFP55145 182 aaKnown RBP18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 RAB40BQ12829 278 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 DUSP6Q16828 381 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 LAMTOR1Q6IAA8 161 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 KIAA1211LQ6NV74 962 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 PLA2G15Q8NCC3 412 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 OR4K5Q8NGD3 323 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 MYLIPQ8WY64 445 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 RNFT2Q96EX2 444 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 SIRT3Q9NTG7 399 aaPredicted RBP18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 MAN2C1Q9NTJ4 1040 aa18.51■□□□□ 0.55
PDLIM3-212ENST00000620787 PRAMEF27A3QJZ7 478 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 NRG2O14511 850 aaPredicted RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SOD2P04179 222 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 OR12D1P0DN82 309 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 ACADMP11310 421 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SLC7A9P82251 487 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SNAPC1Q16533 368 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 NDUFA9Q16795 377 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 METAP1DQ6UB28 335 aaPredicted RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TECPR1Q7Z6L1 1165 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TMC8Q8IU68 726 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 ZFP41Q8N8Y5 198 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 CITED4Q96RK1 184 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 ZNF607Q96SK3 696 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 ATF6BQ99941 703 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TMEM43Q9BTV4 400 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TRAF4Q9BUZ4 470 aaPredicted RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 GTPBP2Q9BX10 602 aaKnown RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 PLA2G12AQ9BZM1 189 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SERHL2Q9H4I8 314 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 FAM240BA0A1B0GVZ2 78 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 CASKO14936 926 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 PDPK1O15530 556 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TPD52L2O43399 206 aaKnown RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TIMP2P16035 220 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SNRPD2P62316 118 aaKnown RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 HSPB3Q12988 150 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 RAB33AQ14088 237 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 WSCD2Q2TBF2 565 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SMUG1Q53HV7 270 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 IQCHQ86VS3 1027 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 KIF18BQ86Y91 864 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TCEAL8Q8IYN2 117 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 OR9A1PQ8NGU1 263 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 DCLRE1CQ96SD1 692 aaKnown RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 TREX2Q9BQ50 279 aaPredicted RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 MARVELD1Q9BSK0 173 aa18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 ZNF717Q9BY31 904 aaPredicted RBP18.5■□□□□ 0.55
PDLIM3-212ENST00000620787 SMLR1H3BR10 107 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 PLPP1O14494 284 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 PRODHO43272 600 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 SH3BP5O60239 455 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 LEFTY1O75610 366 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 LIMS3P0CW19 117 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 LIMS4P0CW20 117 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 SOX18P35713 384 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 OR3A3P47888 321 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 EVX1P49640 407 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 ABATP80404 500 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 NFE2L1Q14494 772 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 SYPL1Q16563 259 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 ZNF485Q8NCK3 441 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 MORN4Q8NDC4 146 aa18.49■□□□□ 0.55
PDLIM3-212ENST00000620787 SENP5Q96HI0 755 aaPredicted RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms