RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TRAF6Q9Y4K3 522 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 RELNP78509 3460 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 PCNX1Q96RV3 2341 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 ACOT7O00154 380 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 TFECO14948 347 aaPredicted RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 SNUPNO95149 360 aaKnown RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 ZWINTO95229 277 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 STSP08842 583 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 CREB1P16220 341 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 DDCP20711 480 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 CNR1P21554 472 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 SSTR4P31391 388 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 ETV4P43268 484 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 TMED10P49755 219 aaKnown RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 CASP6P55212 293 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 C4orf17Q53FE4 359 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 FAM219BQ5XKK7 198 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 KANK2Q63ZY3 851 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 NOXRED1Q6NXP6 359 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 RGS9BPQ6ZS82 235 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 GK5Q6ZS86 529 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 IKBIPQ70UQ0 350 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 MDGA2Q7Z553 956 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 EXOC3L1Q86VI1 746 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 MMP21Q8N119 569 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 GHDCQ8N2G8 530 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 ZFP62Q8NB50 900 aaPredicted RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 C17orf47Q8NEP4 570 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 C16orf52Q8NHV5 167 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 ZNF675Q8TD23 568 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 DOK4Q8TEW6 326 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 EXOSC8Q96B26 276 aaKnown RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 SPACA9Q96E40 222 aaPredicted RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 CNRIP1Q96F85 164 aaPredicted RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 ZNF681Q96N22 645 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 BBS4Q96RK4 519 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 CCT7Q99832 543 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 LRTM1Q9HBL6 345 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 TNFRSF12AQ9NP84 129 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 MYNNQ9NPC7 610 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 SLC35C2Q9NQQ7 365 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 HEY2Q9UBP5 337 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 PRODH2Q9UF12 536 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 BCAP29Q9UHQ4 241 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 TMED5Q9Y3A6 229 aa12.38□□□□□ -0.43
CLK3-213ENST00000563842 SPTAN1Q13813 2472 aaKnown RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 ANKRD17O75179 2603 aaKnown RBP12.38□□□□□ -0.43
CLK3-213ENST00000563842 A0A1W2PS29 197 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 NPIPA5E9PKD4 350 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 TP53I11O14683 189 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 BIRC5O15392 142 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 ASNA1O43681 348 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 SEMA7AO75326 666 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 SLITRK5O94991 958 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CHRNGP07510 517 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CT62P0C5K7 136 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 DDX5P17844 614 aaKnown RBP12.37□□□□□ -0.43
CLK3-213ENST00000563842 SERPINB4P48594 390 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 NR0B1P51843 470 aaKnown RBP12.37□□□□□ -0.43
CLK3-213ENST00000563842 KCNK10P57789 538 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 DCAF7P61962 342 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 RPP38P78345 283 aaKnown RBP12.37□□□□□ -0.43
CLK3-213ENST00000563842 PLGLB1Q02325 96 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 ZNF750Q32MQ0 723 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 ZNF791Q3KP31 576 aaPredicted RBP12.37□□□□□ -0.43
CLK3-213ENST00000563842 TNFAIP8L3Q5GJ75 292 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 SH2D4BQ5SQS7 431 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 SLC22A10Q63ZE4 541 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 PAOXQ6QHF9 649 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 DDIASQ8IXT1 998 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CCDC116Q8IYX3 515 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 KIRREL3Q8IZU9 778 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 ZNF615Q8N8J6 731 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CDC26Q8NHZ8 85 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 TWIST2Q8WVJ9 160 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CTHRC1Q96CG8 243 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 MAGED4Q96JG8 741 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 FAM173AQ9BQD7 235 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 KCNK9Q9NPC2 374 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 TAS2R7Q9NYW3 318 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 MAT2BQ9NZL9 334 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CNIH4Q9P003 139 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 ZNF639Q9UID6 485 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 NPIPA1Q9UND3 350 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 CCL27Q9Y4X3 112 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 POLR3HQ9Y535 204 aaPredicted RBP12.37□□□□□ -0.43
CLK3-213ENST00000563842 DNAJC15Q9Y5T4 150 aa12.37□□□□□ -0.43
CLK3-213ENST00000563842 NUP214P35658 2090 aaPredicted RBP12.36□□□□□ -0.43
CLK3-213ENST00000563842 NADKO95544 446 aaPredicted RBP12.36□□□□□ -0.43
CLK3-213ENST00000563842 CLPSP04118 112 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 FBXO45P0C2W1 286 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 LINC00032P0C843 101 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 S1PR1P21453 382 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 MAPK1P28482 360 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 NTSP30990 170 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 GPR85P60893 370 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 KIAA0040Q15053 153 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 CEBPEQ15744 281 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 NTRK2Q16620 822 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms