RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 VPS8Q8N3P4 1428 aa3.69□□□□□ -1.82
PRPF39-210ENST00000556718 ZMYM6O95789 1325 aa3.69□□□□□ -1.82
PRPF39-210ENST00000556718 CUX2O14529 1486 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 MEIOCA2RUB1 952 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 NEDD8-MDP1E9PL57 170 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 H0YCG3 227 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 E2F3O00716 465 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 CHADO15335 359 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 ADAM12O43184 909 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 TSPAN2O60636 221 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PCCBP05166 539 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 KRT8P05787 483 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 THRBP10828 461 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PRG2P13727 222 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 GNB3P16520 340 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PSMA5P28066 241 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 RPL27P61353 136 aaKnown RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 RPS4XP62701 263 aaKnown RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PMP22Q01453 160 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 ELP6Q0PNE2 266 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 RIGQ13278 110 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 FAM189A2Q15884 450 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PARP6Q2NL67 630 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 BSPRYQ5W0U4 402 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 ITIH5Q86UX2 942 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 MYPOPQ86VE0 399 aaPredicted RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 RANBP3LQ86VV4 465 aaPredicted RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 KRTAP7-1Q8IUC3 87 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 OR4N5Q8IXE1 308 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PYROXD2Q8N2H3 581 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 MNS1Q8NEH6 495 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 NUP37Q8NFH4 326 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 IPMKQ8NFU5 416 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 WDR36Q8NI36 951 aaKnown RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 P3H4Q92791 437 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PNPLA2Q96AD5 504 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 DTNBP1Q96EV8 351 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 LRR1Q96L50 414 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 ALKBH3Q96Q83 286 aaPredicted RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 TSPAN18Q96SJ8 248 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 SYT15Q9BQS2 421 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 RAB11FIP5Q9BXF6 653 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 TEX13BQ9BXU2 312 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 NLNQ9BYT8 704 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 CXXC4Q9H2H0 198 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 SP140LQ9H930 580 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 WDR76Q9H967 626 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 PLEKHA3Q9HB20 300 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 SLC25A19Q9HC21 320 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 POLD4Q9HCU8 107 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 SPHK2Q9NRA0 654 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 GDAP2Q9NXN4 497 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 TUBGCP4Q9UGJ1 667 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 ATP6V1HQ9UI12 483 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 MRPS28Q9Y2Q9 187 aaKnown RBP3.68□□□□□ -1.82
PRPF39-210ENST00000556718 FKBP7Q9Y680 259 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 AFF2P51816 1311 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 SMARCA2P51531 1590 aa3.68□□□□□ -1.82
PRPF39-210ENST00000556718 KTN1Q86UP2 1357 aaKnown RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 LOC390937A0A1W2PQ73 354 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 A8MU76 341 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 E9PMD0 336 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 NPIPB9F8W1W9 429 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 SGK494L7N484 410 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 MCF2LO15068 1137 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 TLX2O43763 284 aaPredicted RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 NDUFA7O95182 113 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ANP32DO95626 131 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 CA3P07451 260 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 PATE4P0C8F1 98 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ZCCHC18P0CG32 403 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 EPB41P11171 864 aaKnown RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 AOC1P19801 751 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 IL4RP24394 825 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 PTPN6P29350 595 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 PDHA2P29803 388 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 OPRL1P41146 370 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 RIPK4P57078 832 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ERVK11-1P61568 191 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 TRA2BP62995 288 aaKnown RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 NOP14P78316 857 aaKnown RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 SRYQ05066 204 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ZNF177Q13360 481 aaPredicted RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 KIAA0141Q14154 515 aaPredicted RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 MTF1Q14872 753 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ECSCRQ19T08 205 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 HKDC1Q2TB90 917 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ZNF528Q3MIS6 628 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 POM121L1PQ3SYA9 428 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 KIF6Q6ZMV9 814 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 FRRS1Q6ZNA5 592 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 ARMCX2Q7L311 632 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 GPR142Q7Z601 462 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 GCNT2Q8N0V5 402 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 OR52B6Q8NGF0 335 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 FAM76AQ8TAV0 307 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 SPPL2AQ8TCT8 520 aa3.67□□□□□ -1.82
PRPF39-210ENST00000556718 PCNPQ8WW12 178 aaKnown RBP3.67□□□□□ -1.82
PRPF39-210ENST00000556718 FAM218AQ96MZ4 157 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms