RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 A0A1W2PRG6 482 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 C2orf81A6NN90 581 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 B4DXG7 233 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 MITFO75030 526 aaPredicted RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 SLC43A1O75387 559 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OR4F21O95013 312 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 WDPCPO95876 746 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DHFRP00374 187 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ITGB1P05556 798 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L2P0CJ85 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L3P0CJ86 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L4P0CJ87 422 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L5P0CJ88 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L6P0CJ89 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4L7P0CJ90 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ADORA3P0DMS8 318 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ARSAP15289 507 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RHCEP18577 417 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 HK1P19367 917 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 F8A1P23610 371 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 CSTF2P33240 577 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP28-202ENST00000535607 PBX3P40426 434 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 CLCN4P51793 760 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 DGKQP52824 942 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 BTG1P62324 171 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PSPHP78330 225 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PLP2Q04941 152 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ZNF33BQ06732 778 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 FOXL1Q12952 345 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 NCF4Q15080 339 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 CNN3Q15417 329 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 MED22Q15528 200 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 IQCCQ4KMZ1 466 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PYDC2Q56P42 97 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RAB41Q5JT25 222 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 GARNL3Q5VVW2 1013 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 HACD4Q5VWC8 232 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RNLSQ5VYX0 342 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PSRC1Q6PGN9 363 aaPredicted RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 TMEM207Q6UWW9 146 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ALKAL1Q6UXT8 129 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 CLEC20AQ6ZU45 233 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 C11orf96Q7Z7L8 435 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PIM3Q86V86 326 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ENTHD1Q8IYW4 607 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 HS3ST5Q8IZT8 346 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RBFAQ8N0V3 343 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP28-202ENST00000535607 YIPF7Q8N8F6 280 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RTL3Q8N8U3 475 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 VPS37AQ8NEZ2 397 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ZMIZ2Q8NF64 920 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OR4F6Q8NGB9 312 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OR8H1Q8NGG4 311 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OR8K5Q8NH50 307 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 LHFPL5Q8TAF8 219 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 GGHQ92820 318 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 MYLPFQ96A32 169 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 FUBP1Q96AE4 644 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 SH3KBP1Q96B97 665 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 CREB3L1Q96BA8 519 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 TMEM80Q96HE8 168 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 TEX37Q96LM6 180 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 UROC1Q96N76 676 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PGLYRP2Q96PD5 576 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ALOXE3Q9BYJ1 711 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 UCK2Q9BZX2 261 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 POLR1EQ9GZS1 481 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 SRRQ9GZT4 340 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OR51E2Q9H255 320 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PIGUQ9H490 435 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 RETREG1Q9H6L5 497 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 LRTM1Q9HBL6 345 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 NT5MQ9NPB1 228 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 EXOSC4Q9NPD3 245 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 PRDM8Q9NQV8 689 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ABCC13Q9NSE7 274 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 EXD2Q9NVH0 621 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 OSER1Q9NX31 292 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 THUMPD1Q9NXG2 353 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 EIF3KQ9UBQ5 218 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 DUX4Q9UBX2 424 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 NUFIP1Q9UHK0 495 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 GSTK1Q9Y2Q3 226 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 HSPB11Q9Y547 144 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 PTGDR2Q9Y5Y4 395 aa6.25□□□□□ -1.41
USP28-202ENST00000535607 ZNF638Q14966 1978 aaKnown RBP6.25□□□□□ -1.41
USP28-202ENST00000535607 GBF1Q92538 1859 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 LOC285095A0A1B0GVY8 99 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 A0A1W2PQ09 198 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 ARL5CA6NH57 179 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 YJEFN3A6XGL0 299 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 LEUTXA8MZ59 168 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 ZNF670-ZNF695F2Z2N8 137 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 H0YC42 278 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 K7ESM1 405 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 TNFRSF11BO00300 401 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 E2F3O00716 465 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 RFXANKO14593 260 aa6.24□□□□□ -1.41
USP28-202ENST00000535607 CTDSP2O14595 271 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms