RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ACTN3Q08043 901 aaPredicted RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 CCL14Q16627 93 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 PCK2Q16822 640 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 NHLRC3Q5JS37 347 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ABRAXAS1Q6UWZ7 409 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ITIH5Q86UX2 942 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ZNF410Q86VK4 478 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 SNX32Q86XE0 403 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 HIPK1Q86Z02 1210 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 HSCBQ8IWL3 235 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 LINC00518Q8N0U6 118 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 SFRP1Q8N474 314 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 KIAA1524Q8TCG1 905 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 PNPLA2Q96AD5 504 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 MRPL53Q96EL3 112 aaKnown RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 EEF2KMTQ96G04 330 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 CABS1Q96KC9 395 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 APOL2Q9BQE5 337 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ABCG4Q9H172 646 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 SLC25A19Q9HC21 320 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 AKAP7Q9P0M2 348 aaPredicted RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 ERVK-18Q9QC07 812 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 SEC14L4Q9UDX3 406 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 DIMT1Q9UNQ2 313 aaKnown RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 TDRD6O60522 2096 aaKnown RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 FOXI3A8MTJ6 420 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 KRTAP4-16G5E9R7 235 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 K7ERI5 159 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 KERAO60938 352 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 HSF2BPO75031 334 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 FCER2P06734 321 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 FCGR3AP08637 254 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 SERPINF2P08697 491 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 CCDC159P0C7I6 412 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 FAM200BP0CF97 657 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 P4HA1P13674 534 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 AREGP15514 252 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 FCARP24071 287 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 GFPT1Q06210 699 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 MSLNQ13421 630 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 TSTA3Q13630 321 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 CNPY1Q3B7I2 92 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 ANKRD55Q3KP44 614 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 UNC50Q53HI1 259 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 HIST2H2AA3Q6FI13 130 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 CDC42EP5Q6NZY7 148 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 RFWD3Q6PCD5 774 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 CNTN4Q8IWV2 1026 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 RELL2Q8NC24 303 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 OR4F5Q8NH21 305 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 RAB39BQ96DA2 213 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 COG3Q96JB2 828 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 ZNF560Q96MR9 790 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 GPR137Q96N19 417 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 PRAM1Q96QH2 718 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 NAP1L3Q99457 506 aaPredicted RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 TRPV6Q9H1D0 765 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 TMEM245Q9H330 911 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 DCTPP1Q9H773 170 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 IL1RL2Q9HB29 575 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 ABCC13Q9NSE7 274 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 PIGVQ9NUD9 493 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 TAS2R16Q9NYV7 291 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 ADAM22Q9P0K1 906 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 HMG20BQ9P0W2 317 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 NARFQ9UHQ1 456 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 TDRKHQ9Y2W6 561 aaKnown RBP2.64□□□□□ -1.99
VPS50-219ENST00000495039 AFF2P51816 1311 aa2.64□□□□□ -1.99
VPS50-219ENST00000495039 MCF2LO15068 1137 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 REC8O95072 547 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 HOXC4P09017 264 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 HIST1H2AGP0C0S8 130 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 HLA-DPA1P20036 260 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 COPB2P35606 906 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 TKTL1P51854 596 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 SLC7A2P52569 658 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ZNF131P52739 623 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 RPS4XP62701 263 aaKnown RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 CCZ1BP86790 482 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 CCZ1P86791 482 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 PPP1R8Q12972 351 aaKnown RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 CRMP1Q14194 572 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ABRAXAS2Q15018 415 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 EXOSC7Q15024 291 aaKnown RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 HFEQ30201 348 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 EPC2Q52LR7 807 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 GPAT3Q53EU6 434 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 NKAIN2Q5VXU1 208 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 RHBDD2Q6NTF9 364 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 STEAP1BQ6NZ63 245 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ASRGL1Q7L266 308 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 GPR142Q7Z601 462 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ADGRD2Q7Z7M1 963 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 FAM9BQ8IZU0 186 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ZNF713Q8N859 430 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 RDH11Q8TC12 318 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ATP6V0A1Q93050 837 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 HIST1H2ACQ93077 130 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 SLCO4A1Q96BD0 722 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms