RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ASMTP46597 345 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 HTRA3P83110 453 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 RBBP4Q09028 425 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF763Q0D2J5 394 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 TEAD2Q15562 447 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 FLYWCH1Q4VC44 716 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 KIAA1161Q6NSJ0 714 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 ACSM5Q6NUN0 579 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 MED27Q6P2C8 311 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 TMEM220Q6QAJ8 160 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 IQCHQ86VS3 1027 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 VWA5B2Q8N398 1253 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 OR6C4Q8NGE1 309 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 TMEM19Q96HH6 336 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 DCLRE1CQ96SD1 692 aaKnown RBP11.78□□□□□ -0.52
HDAC4-208ENST00000463007 CDCA4Q9BXL8 241 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 CHST8Q9H2A9 424 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 FAM83DQ9H4H8 585 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 EGLN3Q9H6Z9 239 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 SPHK2Q9NRA0 654 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 C1GALT1Q9NS00 363 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 DKK3Q9UBP4 350 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 ANGPT4Q9Y264 503 aa11.78□□□□□ -0.52
HDAC4-208ENST00000463007 MRPS7Q9Y2R9 242 aaKnown RBP11.78□□□□□ -0.52
HDAC4-208ENST00000463007 ZAR1LA6NP61 321 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 HEPACAM2A8MVW5 462 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 NEDD8-MDP1E9PL57 170 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 NPC1O15118 1278 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SPINT1O43278 529 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 HRO43593 1189 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SLC28A2O43868 658 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 MRPS14O60783 128 aaKnown RBP11.77□□□□□ -0.52
HDAC4-208ENST00000463007 TYRP14679 529 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 IMPA1P29218 277 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 VIPR1P32241 457 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 BUD31P41223 144 aaPredicted RBP11.77□□□□□ -0.52
HDAC4-208ENST00000463007 TBPL1P62380 186 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 CSTF1Q05048 431 aaKnown RBP11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SLX4IPQ5VYV7 408 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 UNC5DQ6UXZ4 953 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 DNAJC5GQ8N7S2 189 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 C9orf43Q8TAL5 461 aaPredicted RBP11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SLC7A13Q8TCU3 470 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SLC38A5Q8WUX1 472 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 KAT2AQ92830 837 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 RAD9AQ99638 391 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 MACROD1Q9BQ69 325 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 NLNQ9BYT8 704 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 CXorf36Q9H7Y0 433 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 SPATA6Q9NWH7 488 aaPredicted RBP11.77□□□□□ -0.52
HDAC4-208ENST00000463007 FTSJ1Q9UET6 329 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 ATP6V1HQ9UI12 483 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF222Q9UK12 451 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 A3GALT2U3KPV4 340 aa11.77□□□□□ -0.52
HDAC4-208ENST00000463007 MYO15AQ9UKN7 3530 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF670-ZNF695F2Z2N8 137 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 LZTS3O60299 673 aaPredicted RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CATP04040 527 aaKnown RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MSL3P1P0C860 447 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 EVI2BP34910 448 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 AP1S2P56377 157 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 FAPQ12884 760 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MRPL28Q13084 256 aaKnown RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 NCF4Q15080 339 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF791Q3KP31 576 aaPredicted RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CRB2Q5IJ48 1285 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 LIPJQ5W064 366 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 TRIM69Q86WT6 500 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 OR52N2Q8NGI0 321 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 OR4D11Q8NGI4 311 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MAPKAP1Q9BPZ7 522 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MND1Q9BWT6 205 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 TTTY10Q9BZA0 68 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ANKRA2Q9H9E1 313 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 TDP1Q9NUW8 608 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 SEC14L4Q9UDX3 406 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 GRIP1Q9Y3R0 1128 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ALPK3Q96L96 1907 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ANHXE9PGG2 379 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 TIMP2P16035 220 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 GPR19Q15760 415 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 SYPL1Q16563 259 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CLPPQ16740 277 aaPredicted RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MSANTD1Q6ZTZ1 278 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 RTL10Q7L3V2 364 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 ADCK2Q7Z695 626 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MRPL43Q8N983 215 aaKnown RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CREB3L4Q8TEY5 395 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 C16orf78Q8WTQ4 265 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 KLK6Q92876 244 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 MAP6Q96JE9 813 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 KCTD7Q96MP8 289 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 RSPO3Q9BXY4 272 aaPredicted RBP11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CNIH4Q9P003 139 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 GULP1Q9UBP9 304 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CORO2BQ9UQ03 480 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 CACNA1IQ9P0X4 2223 aa11.77□□□□□ -0.53
HDAC4-208ENST00000463007 HYAL3O43820 417 aaPredicted RBP11.76□□□□□ -0.53
HDAC4-208ENST00000463007 UGDHO60701 494 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms