RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF629Q9UEG4 869 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 PYCARDQ9ULZ3 195 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 STK38LQ9Y2H1 464 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 RNF11Q9Y3C5 154 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 CHCHD2Q9Y6H1 151 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 A0A0G2JNJ9 132 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 FAM221AA4D161 298 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 SYT5O00445 386 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ACOX3O15254 700 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZNHIT1O43257 154 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 EEDO75530 441 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 TRAPPC6AO75865 159 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 GOSR1O95249 250 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 NADKO95544 446 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 EPPINO95925 133 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ACTL6AO96019 429 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ALDOAP04075 364 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 KLK1P06870 262 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 RHOXF2BP0C7M4 288 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 HSD3B1P14060 373 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 POU3F2P20265 443 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 TAC1P20366 129 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 NT5EP21589 574 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 HSD3B2P26439 372 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 KIR2DL3P43628 341 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MASP1P48740 699 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 XKP51811 444 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 NR0B1P51843 470 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 MAPK12P53778 367 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 TRA2BP62995 288 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 FUT7Q11130 342 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MAP4K2Q12851 820 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 RCAN2Q14206 197 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 EBPQ15125 230 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 TOMM20Q15388 145 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 WHAMMP3Q1A5X7 153 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 GGTA1PQ4G0N0 100 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 TECRLQ5HYJ1 363 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 TMEM81Q6P7N7 255 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZDHHC24Q6UX98 284 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 NCCRP1Q6ZVX7 275 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 NUP54Q7Z3B4 507 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 TMEM200AQ86VY9 491 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 LACC1Q8IV20 430 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ULK2Q8IYT8 1036 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 PTGR2Q8N8N7 351 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 CHDHQ8NE62 594 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 OR10G3Q8NGC4 313 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 SLC44A1Q8WWI5 657 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 NINJ1Q92982 152 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ERP27Q96DN0 273 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MTBPQ96DY7 904 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MRRFQ96E11 262 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 PHF21BQ96EK2 531 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 GPR78Q96P69 363 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 LRRC1Q9BTT6 524 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 SORBS1Q9BX66 1292 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZNF717Q9BY31 904 aaPredicted RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 ANGPTL4Q9BY76 406 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 FUT8Q9BYC5 575 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MRPL46Q9H2W6 279 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZDHHC18Q9NUE0 388 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 PRODH2Q9UF12 536 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 Q9UFV3 132 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 FETUBQ9UGM5 382 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZNF180Q9UJW8 692 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 CNOT11Q9UKZ1 510 aaKnown RBP6.5□□□□□ -1.37
VPS41-208ENST00000448833 ZNF780BQ9Y6R6 833 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 CSMD1Q96PZ7 3565 aa6.5□□□□□ -1.37
VPS41-208ENST00000448833 MPDZO75970 2070 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 DOCK7Q96N67 2140 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 POLQO75417 2590 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 MAP1AP78559 2803 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 A0A087WUV0 522 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 C15orf38-AP3S2A0A0A6YYH1 394 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 A0A0G2JMM0 328 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 A0A1W2PPB8 328 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 A0A1W2PRS3 328 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 HMX2A2RU54 273 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 GLOD5A6NK44 160 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 KIR3DP1A8MWS1 328 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 HRKO00198 91 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 OR7A17O14581 309 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 PGRMC2O15173 223 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TMPRSS11DO60235 418 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ZNF354AO60765 605 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 TRIM3O75382 744 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 CBR3O75828 277 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 URI1O94763 535 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 SIX3O95343 332 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 AIFM1O95831 613 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 KRT6AP02538 564 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 KRT6BP04259 564 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ATP1B1P05026 303 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 HPNP05981 417 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SNRPAP09012 282 aaKnown RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 CPMP14384 443 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 DRD2P14416 443 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 DRD5P21918 477 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 OPRM1P35372 400 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms