RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 THAP4Q8WY91 577 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 JADE3Q92613 823 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 GTF2H4Q92759 462 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 KAT2AQ92830 837 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 UCN3Q969E3 161 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 LRRC58Q96CX6 371 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 ELP4Q96EB1 424 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 VMP1Q96GC9 406 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 MS4A4EQ96PG1 132 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 CCNL2Q96S94 520 aaPredicted RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 NPAS2Q99743 824 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 ECSITQ9BQ95 431 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 ARL8BQ9NVJ2 186 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 DKK4Q9UBT3 224 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 MRTO4Q9UKD2 239 aaKnown RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 ERVK-19Q9WJR5 959 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 MYOCOSA0A1B0GUC4 107 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 SAGE2PA6NJ88 616 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 WASHC1A8K0Z3 465 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 PLOD2O00469 737 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 PLOD3O60568 738 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 CBX6O95503 412 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 LIFP15018 202 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 MC3RP41968 323 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 MAGEA8P43361 318 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 UCNP55089 124 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 DCAF7P61962 342 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 RPS18P62269 152 aaKnown RBP9.43□□□□□ -0.9
CD44-207ENST00000425428 PSPHP78330 225 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 VAC14Q08AM6 782 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 TLR1Q15399 786 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 PRICKLE4Q2TBC4 344 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 BTBD16Q32M84 506 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 ATAD3BQ5T9A4 648 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 ZCCHC12Q6PEW1 402 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 HACD2Q6Y1H2 254 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 LANCL3Q6ZV70 420 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 B3GNT7Q8NFL0 401 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 GOT1L1Q8NHS2 421 aaPredicted RBP9.43□□□□□ -0.9
CD44-207ENST00000425428 SNIP1Q8TAD8 396 aaKnown RBP9.43□□□□□ -0.9
CD44-207ENST00000425428 ADAMTS15Q8TE58 950 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 FBXL20Q96IG2 436 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 SLC45A3Q96JT2 553 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 SLC35G5Q96KT7 338 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 ZNF700Q9H0M5 742 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 RYDENQ9NUL5 291 aaKnown RBP9.43□□□□□ -0.9
CD44-207ENST00000425428 EXD2Q9NVH0 621 aa9.43□□□□□ -0.9
CD44-207ENST00000425428 CDC14CA4D256 554 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR2W5A6NFC9 320 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CLIC1O00299 241 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 DNAJA2O60884 412 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SEC24DO94855 1032 aaPredicted RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 HPP00738 406 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 GSNP06396 782 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 UMODP07911 640 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 KRT20P35900 424 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CRATP43155 626 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CPA2P48052 419 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 KHKP50053 298 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 WNT3P56703 355 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 NRG3P56975 720 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ZNF155Q12901 538 aaPredicted RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 TGIF1Q15583 401 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ZNF750Q32MQ0 723 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ZNF628Q5EBL2 1059 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CPZQ66K79 652 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 HSDL2Q6YN16 418 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CCDC81Q6ZN84 652 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR1N1Q8NGS0 311 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 PSMA8Q8TAA3 256 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SLC2A12Q8TD20 617 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 MCUR1Q96AQ8 359 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SENP5Q96HI0 755 aaPredicted RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 CGREF1Q99674 301 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 INPP5KQ9BT40 448 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 DEFB126Q9BYW3 111 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR10A5Q9H207 317 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 C1orf21Q9H246 121 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 TPT1P8Q9HAU6 139 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SPAG4Q9NPE6 437 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ATP13A2Q9NQ11 1180 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 EQTNQ9NQ60 294 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ADA2Q9NZK5 511 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 MAT2BQ9NZL9 334 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ABI3Q9P2A4 366 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 TEKT2Q9UIF3 430 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 C19orf53Q9UNZ5 99 aaPredicted RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 POLHQ9Y253 713 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 PCDHB14Q9Y5E9 798 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 LOC102723996A0A087X1L8 192 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 IGHV1-45A0A0A0MS14 117 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CNOT3O75175 753 aaKnown RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 ZFAND5O76080 213 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 UNC5CO95185 931 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ALOX5P09917 674 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 MATN1P21941 496 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CDK9P50750 372 aaKnown RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 PSMD4P55036 377 aaKnown RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 PHC1P78364 1004 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 MRPS35P82673 323 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms