RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ATXN7O15265 892 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 POLR3GO15318 223 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 EMC8O43402 210 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PRAMEF2O60811 474 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 JRKO75564 520 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 AK1P00568 194 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PGRP06401 933 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SFTPCP11686 197 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 GPX2P18283 190 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 OR4D2P58180 307 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 GNGT1P63211 74 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CYP27C1Q4G0S4 372 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CPTPQ5TA50 214 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 TCTN3Q6NUS6 607 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 OR7G2Q8NG99 324 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 DGAT2Q96PD7 388 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PAIP2Q9BPZ3 127 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CPNE5Q9HCH3 593 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 THUMPD1Q9NXG2 353 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 TAS2R9Q9NYW1 312 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PRODH2Q9UF12 536 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 FBXW2Q9UKT8 454 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF780BQ9Y6R6 833 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 A0A1W2PS29 197 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 FXYD1O00168 92 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CFLARO15519 480 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SORBS2O94875 1100 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CT45A8P0DMV1 189 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CT45A9P0DMV2 189 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CAPN3P20807 821 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 KLF10Q13118 480 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ELOAQ14241 798 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 RUNDC3AQ59EK9 446 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CT45A2Q5DJT8 189 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF324BQ6AW86 544 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 BORAQ6PGQ7 559 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PAPD4Q6PIY7 484 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 KRTCAP2Q8N6L1 136 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 FAM71CQ8NEG0 241 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 OR8J3Q8NGG0 315 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 DYDC1Q8WWB3 177 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CCT6BQ92526 530 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF354BQ96LW1 612 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PTCHD1Q96NR3 888 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 MS4A4EQ96PG1 132 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CPPED1Q9BRF8 314 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 EBPLQ9BY08 206 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 MFRPQ9BY79 579 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 NMUR2Q9GZQ4 415 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 WWTR1Q9GZV5 400 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SERHL2Q9H4I8 314 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 NPHS2Q9NP85 383 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 A4GALTQ9NPC4 353 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ABCG2Q9UNQ0 655 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF860A6NHJ4 632 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 FAAHO00519 579 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 TNFRSF21O75509 655 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PRKRAO75569 313 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 DNAJB5O75953 348 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 STATHP02808 62 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 KRT16P08779 473 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PTGDSP41222 190 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 RPS18P62269 152 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 RNF4P78317 190 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PSG6Q00889 435 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 DDX39BQ13838 428 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NSDHLQ15738 373 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC81Q6ZN84 652 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 LRRC69Q6ZNQ3 347 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 Q6ZS92 163 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 GALNT12Q8IXK2 581 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 VWA5B2Q8N398 1253 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 OR7A2PQ8NGA2 310 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 RIT1Q92963 219 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 SENP5Q96HI0 755 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 HBEGFQ99075 208 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 LPAR4Q99677 370 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 DPY30Q9C005 99 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 CXorf36Q9H7Y0 433 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PROK2Q9HC23 129 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 BCL2L10Q9HD36 194 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 ATP13A2Q9NQ11 1180 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 CNOT11Q9UKZ1 510 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NTNG1Q9Y2I2 539 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NDUFAF1Q9Y375 327 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 EML6Q6ZMW3 1958 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NKX2-8O15522 239 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 AGR2O95994 175 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 ITGAMP11215 1152 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PPIBP23284 216 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NTSP30990 170 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 KIR3DL1P43629 444 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 MAPRE2Q15555 327 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 SGO1Q5FBB7 561 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM198Q66K66 360 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 MFSD12Q6NUT3 480 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 NPSR1Q6W5P4 371 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 OR5L2Q8NGL0 311 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PAQR8Q8TEZ7 354 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 APOBEC4Q8WW27 367 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms