RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SCAMP2O15127 329 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 CDK1P06493 297 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 SPARCP09486 303 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 IL4RP24394 825 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 ATP5A1P25705 553 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 CCKBRP32239 447 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 CASP3P42574 277 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 FGL1Q08830 312 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 GPR19Q15760 415 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 EIF2S3LQ2VIR3 472 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 TBC1D25Q3MII6 688 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 AGAP7PQ5VUJ5 663 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 OR4M2Q8NGB6 313 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 HUS1BQ8NHY5 278 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 PHOSPHO1Q8TCT1 267 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 UNC119BA6NIH7 251 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 COQ9O75208 318 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 SF3A2Q15428 464 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 SPIN3Q5JUX0 258 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 OR13F1Q8NGS4 319 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 RHBDF1Q96CC6 855 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 OR51J1Q9H342 316 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 TXNRD2Q9NNW7 524 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 PCDHB16Q9NRJ7 776 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 GJD2Q9UKL4 321 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 MYO18AQ92614 2054 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 SPDEFO95238 335 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 PITPNBP48739 271 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 NOVP48745 357 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 ALKBH2Q6NS38 261 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 ACVR1CQ8NER5 493 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 TRMT10AQ8TBZ6 339 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 CRYGNQ8WXF5 182 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 HERVK_113Q902F9 699 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 HIST1H2AAQ96QV6 131 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 MYH13Q9UKX3 1938 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 BORCS7-ASMTA0A0B4J1R7 106 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 A8MUA0 341 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GPR89AB7ZAQ6 455 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 SOCS5O75159 536 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GPR89BP0CG08 455 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 AK4P27144 223 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 POLR2IP36954 125 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 PTH2RP49190 550 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 SELENOWP63302 87 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 FAM214AQ32MH5 1076 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF691Q5VV52 312 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 B3GNT8Q7Z7M8 397 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 EIF5A2Q9GZV4 153 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GORASP2Q9H8Y8 452 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 RANGRFQ9HD47 186 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 VNN3Q9NY84 501 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 NDUFAF4Q9P032 175 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 SCDO00767 359 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 FUCA1P04066 466 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 ALPLP05186 524 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 UCHL1P09936 223 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 CDKN2CP42773 168 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 HYAL2Q12891 473 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GET4Q7L5D6 327 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GTPBP8Q8N3Z3 284 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 SUN3Q8TAQ9 357 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 KCNN1Q92952 543 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF300Q96RE9 604 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 RAD9AQ99638 391 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 IL20RAQ9UHF4 553 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 LIPT1Q9Y234 373 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 KCNK6Q9Y257 313 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 TMEM98Q9Y2Y6 226 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 MYH3P11055 1940 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 LOC102723532A0A0G2JNH3 316 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 GRXCR2A6NFK2 248 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 WASH3PC4AMC7 463 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 EEF1E1-BLOC1S5C9J1V9 151 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 FRKP42685 505 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 ERVK-21P61565 698 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 POLDIP3Q9BY77 421 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 TMEM45AQ9NWC5 275 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 F8W036 122 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 RTCAO00442 366 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 SLC16A5O15375 505 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 PTPN6P29350 595 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 BLOC1S1P78537 153 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 FPGSQ05932 587 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 RGNQ15493 299 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 RETREG3Q86VR2 466 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 BRI3BPQ8WY22 251 aa18.63■□□□□ 0.57
CCDC88B-202ENST00000356786 MTMR11A4FU01 709 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 CLUP10909 449 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 TBCEQ15813 527 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 KRBOX4Q5JUW0 171 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 PLBD1Q6P4A8 553 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 TMEM130Q8N3G9 435 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 Q8N9G6 341 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 SMPDL3BQ92485 455 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ARNTLO00327 626 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 SSX5O60225 188 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 NDUFS1P28331 727 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 HMGCLP35914 325 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ART1P52961 327 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms