RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ZNF517Q6ZMY9 492 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 R3HCC1LQ7Z5L2 792 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RETREG3Q86VR2 466 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 TMEM151BQ8IW70 566 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 FAM47BQ8NA70 645 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RP9Q8TA86 221 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 TSPEARQ8WU66 669 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ANKRD9Q96BM1 317 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 CLIP3Q96DZ5 547 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SPDL1Q96EA4 605 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF764Q96H86 408 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 NSL1Q96IY1 281 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 LRFN5Q96NI6 719 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ZBTB18Q99592 522 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ZPBPQ9BS86 351 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 DDA1Q9BW61 102 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 FAIM2Q9BWQ8 316 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ASPSCR1Q9BZE9 553 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SLC7A5P2Q9GIP4 190 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RPF2Q9H7B2 306 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SLAMF7Q9NQ25 335 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 LANCL2Q9NS86 450 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 TXLNGQ9NUQ3 528 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SH3BP4Q9P0V3 963 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 MAP10Q9P2G4 905 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 TAGLN3Q9UI15 199 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 MAPRE3Q9UPY8 281 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 CLDN16Q9Y5I7 305 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 IGLV3-12A0A075B6K2 115 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 A0A1W2PP18 115 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 A0A1W2PS29 197 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CCDC154A6NI56 674 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TGFBR3LH3BV60 316 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 NR5A2O00482 541 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 B4GALT2O60909 372 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CPNE3O75131 537 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CNOT3O75175 753 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 BMP10O95393 424 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 DLGAP3O95886 979 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 FHP07954 510 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 NR2F6P10588 404 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 FBLP22087 321 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TLX1P31314 330 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 S100A3P33764 101 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 HPCAL1P37235 193 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 BUD31P41223 144 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 FRKP42685 505 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 KIR3DL1P43629 444 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 XCR1P46094 333 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 KCNK10P57789 538 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 BTG2P78543 158 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SPRED3Q2MJR0 410 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TIGD2Q4W5G0 525 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 VWA2Q5GFL6 755 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 FAM199XQ6PEV8 388 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SLC2A7Q6PXP3 512 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 OVCH1Q7RTY7 1134 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 LAPTM4BQ86VI4 370 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 ZC3H7AQ8IWR0 971 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 OR4N5Q8IXE1 308 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 GALNT6Q8NCL4 622 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 FBXO27Q8NI29 283 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TANKQ92844 425 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CIDECQ96AQ7 238 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 EXOSC8Q96B26 276 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TBC1D20Q96BZ9 403 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 MIEF2Q96C03 454 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 PPCDCQ96CD2 204 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CMTM5Q96DZ9 223 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 CNRIP1Q96F85 164 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF681Q96N22 645 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 OR52E6Q96RD3 313 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 PRPF18Q99633 342 aaKnown RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 NPAS2Q99743 824 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SLC25A23Q9BV35 468 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 DUSP26Q9BV47 211 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 YIPF2Q9BWQ6 316 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 RBCK1Q9BYM8 510 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 ULBP3Q9BZM4 244 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 BHLHE41Q9C0J9 482 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TGIF2Q9GZN2 237 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 GPN2Q9H9Y4 310 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SERHLQ9NQF3 203 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SLC35C2Q9NQQ7 365 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 PRDM9Q9NQV7 894 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 EHD3Q9NZN3 535 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 SLAMF8Q9P0V8 285 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 TRPC4Q9UBN4 977 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 KCND3Q9UK17 655 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 UTS2RQ9UKP6 389 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 NDUFAF1Q9Y375 327 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 KCNMB2Q9Y691 235 aa8.84□□□□□ -0.99
TRIM28-208ENST00000597172 MYO7BQ6PIF6 2116 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 TNRC6AQ8NDV7 1962 aaKnown RBP8.83□□□□□ -1
TRIM28-208ENST00000597172 MYOCOSA0A1B0GUC4 107 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 PRSS51A0A1B0GVH4 220 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 DYTNA2CJ06 578 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 VSTM2BA6NLU5 285 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 MYO1GB0I1T2 1018 aa8.83□□□□□ -1
TRIM28-208ENST00000597172 CFLARO15519 480 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms