RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 COPS7AQ9UBW8 275 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 MARCOQ9UEW3 520 aaPredicted RBP16.08■□□□□ 0.16
CLN3-217ENST00000565354 TEKT2Q9UIF3 430 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 UTS2RQ9UKP6 389 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ENTPD4Q9Y227 616 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 CLDN16Q9Y5I7 305 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ZGRF1Q86YA3 2104 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 CNTRLQ7Z7A1 2325 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 WASHC1A8K0Z3 465 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 SLCO1B7G3V0H7 640 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 SNNO75324 88 aaPredicted RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 CLCN2P51788 898 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 XKP51811 444 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 IGLV3-21P80748 117 aaPredicted RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 MAD2L1Q13257 205 aaPredicted RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 ELOAQ14241 798 aaKnown RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 KIAA0040Q15053 153 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 RFTN2Q52LD8 501 aaPredicted RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 CRB2Q5IJ48 1285 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 LINC00696Q6ZRV3 163 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 SLC5A8Q8N695 610 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 MORN4Q8NDC4 146 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 NCLNQ969V3 563 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 EXOSC8Q96B26 276 aaKnown RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 PPWD1Q96BP3 646 aaKnown RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 C11orf24Q96F05 449 aaPredicted RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 VMP1Q96GC9 406 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 C3orf30Q96M34 536 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 DEFB126Q9BYW3 111 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 NUF2Q9BZD4 464 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 OR8D2Q9GZM6 311 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 MYNNQ9NPC7 610 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 ABI3Q9P2A4 366 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 GIMAP2Q9UG22 337 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 HAO1Q9UJM8 370 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 B3GNT3Q9Y2A9 372 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 WBP11Q9Y2W2 641 aaKnown RBP16.07■□□□□ 0.16
CLN3-217ENST00000565354 CELSR1Q9NYQ6 3014 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 ADGRG4Q8IZF6 3080 aa16.07■□□□□ 0.16
CLN3-217ENST00000565354 TRBV11-1A0A0K0K1C0 115 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 SLC35E2P0CK97 266 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 PORP16435 677 aaPredicted RBP16.06■□□□□ 0.16
CLN3-217ENST00000565354 NT5EP21589 574 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 OCRLQ01968 901 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 ABHD17BQ5VST6 288 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 ISLR2Q6UXK2 745 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 IKBIPQ70UQ0 350 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 SAMD14Q8IZD0 417 aaPredicted RBP16.06■□□□□ 0.16
CLN3-217ENST00000565354 RIT1Q92963 219 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 MARVELD3Q96A59 401 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 ZNF354BQ96LW1 612 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 TSSK3Q96PN8 268 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 C1orf50Q9BV19 199 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 CNPPD1Q9BV87 410 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 HEY2Q9UBP5 337 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 EIF3LQ9Y262 564 aaKnown RBP16.06■□□□□ 0.16
CLN3-217ENST00000565354 PDZD2O15018 2839 aa16.06■□□□□ 0.16
CLN3-217ENST00000565354 TRPC5OSA6NMA1 111 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 HDAC3O15379 428 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 HNRNPRO43390 633 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 JUNP05412 331 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 CPMP14384 443 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 DDX5P17844 614 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 SDC1P18827 310 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 CSNK2A2P19784 350 aaPredicted RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 DDCP20711 480 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 FEN1P39748 380 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 ASMTP46597 345 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 C6orf136Q5SQH8 315 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 FAM71E1Q6IPT2 247 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 LIX1Q8N485 282 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 KIF2BQ8N4N8 673 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 ZADH2Q8N4Q0 377 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 AMER2Q8N7J2 671 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 NFAM1Q8NET5 270 aaPredicted RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 CLHC1Q8NHS4 586 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 SLC2A12Q8TD20 617 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 ELP5Q8TE02 316 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 PTPMT1Q8WUK0 201 aaPredicted RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 GFM2Q969S9 779 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 BBS4Q96RK4 519 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 BARD1Q99728 777 aaKnown RBP16.05■□□□□ 0.16
CLN3-217ENST00000565354 BRINP2Q9C0B6 783 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.05■□□□□ 0.16
CLN3-217ENST00000565354 CES1P1Q9UKY3 287 aa16.05■□□□□ 0.16
CLN3-217ENST00000565354 AKAP10O43572 662 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 LRATO95237 230 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 PRPS2P11908 318 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 PRF1P14222 555 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 TACR1P25103 407 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 NTSP30990 170 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 HK2P52789 917 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 ERVK-8P63133 956 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 MFAP5Q13361 173 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 ZNF267Q14586 743 aaPredicted RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 MEP1AQ16819 746 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 ZNF750Q32MQ0 723 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 IL23RQ5VWK5 629 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 B3GNTL1Q67FW5 361 aaPredicted RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 FCRLBQ6BAA4 426 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms