RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 UFD1Q92890 307 aa15.45■□□□□ 0.06
SHMT2-232ENST00000557487 RBFOX1Q9NWB1 397 aaKnown RBP15.45■□□□□ 0.06
SHMT2-232ENST00000557487 DKK3Q9UBP4 350 aa15.45■□□□□ 0.06
SHMT2-232ENST00000557487 TRAV19A0A0A6YYK7 116 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 PLD2O14939 933 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 PI15O43692 258 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 NME6O75414 186 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SOX14O95416 240 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 PRKAR1AP10644 381 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ETV3P41162 512 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SMSP52788 366 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 EFNB1P98172 346 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 TNK1Q13470 666 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 GPR19Q15760 415 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ZNF658BQ4V348 819 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SYT14P1Q58G82 188 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ZNF648Q5T619 568 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 TRIQKQ629K1 86 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 C22orf42Q6IC83 251 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 CD200R1LQ6Q8B3 271 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 TECPR1Q7Z6L1 1165 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SLC9B2Q86UD5 537 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 CHST14Q8NCH0 376 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 NR4A3Q92570 626 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 BADQ92934 168 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ZNF689Q96CS4 500 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ZNF582Q96NG8 517 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 QRFPRQ96P65 431 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SOSTQ9BQB4 213 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 PRRG3Q9BZD7 231 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ZCCHC2Q9C0B9 1178 aaKnown RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 TVP23BQ9NYZ1 205 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SPG21Q9NZD8 308 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ADAM30Q9UKF2 790 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 ASB4Q9Y574 426 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 SPIN1Q9Y657 262 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-232ENST00000557487 LTBP2Q14767 1821 aa15.44■□□□□ 0.06
SHMT2-232ENST00000557487 CARNS1A5YM72 827 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 A8MV72 311 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FAM227AF5H4B4 570 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PLA2G10O15496 165 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PDPK1O15530 556 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 C1QBP02746 253 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GBAP04062 536 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 TP53P04637 393 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ACP2P11117 423 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 CHRNB1P11230 501 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GPC1P35052 558 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FEN1P39748 380 aaKnown RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 KIR2DL3P43628 341 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 CDK5Q00535 292 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GALK2Q01415 458 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FAPQ12884 760 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 TMEM44Q2T9K0 475 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ENTPD8Q5MY95 495 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ATAT1Q5SQI0 421 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 TMEM220Q6QAJ8 160 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 CMTM8Q8IZV2 173 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 OR2A12Q8NGT7 310 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ZFYVE19Q96K21 471 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SPATA5L1Q9BVQ7 753 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ING3Q9NXR8 418 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FAM8A1Q9UBU6 413 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PCM1Q15154 2024 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 TRDV1A0A1B0GX56 115 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 A0A1W2PPC1 479 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 WWP2O00308 870 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PRODHO43272 600 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 TLX2O43763 284 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PRKYO43930 277 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SH3BP5O60239 455 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 OBSL1O75147 1896 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GABRR2P28476 465 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FRKP42685 505 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GIPRP48546 466 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 GZMKP49863 264 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 MXD1Q05195 221 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 PRSS53Q2L4Q9 553 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 LRRC73Q5JTD7 316 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 CHRDL2Q6WN34 429 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SLC36A4Q6YBV0 504 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 DEF8Q6ZN54 512 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 Q6ZVU0 165 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ZNF767PQ75MW2 155 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SLC7A13Q8TCU3 470 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 FGF11Q92914 225 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 CHFRQ96EP1 664 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 LRIG1Q96JA1 1093 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 KATNB1Q9BVA0 655 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SEC14L3Q9UDX4 400 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SLC9A8Q9Y2E8 581 aa15.43■□□□□ 0.06
SHMT2-232ENST00000557487 SF3B6Q9Y3B4 125 aaKnown RBP15.43■□□□□ 0.06
SHMT2-232ENST00000557487 ANKDD1BA6NHY2 528 aa15.42■□□□□ 0.06
SHMT2-232ENST00000557487 SAP18O00422 153 aaKnown RBP15.42■□□□□ 0.06
SHMT2-232ENST00000557487 SLC2A2P11168 524 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-232ENST00000557487 TIMP2P16035 220 aa15.42■□□□□ 0.06
SHMT2-232ENST00000557487 ALAS2P22557 587 aa15.42■□□□□ 0.06
SHMT2-232ENST00000557487 XPAP23025 273 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-232ENST00000557487 ETV5P41161 510 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms