RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ERVK-16P61578 105 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 SNRPD1P62314 119 aaKnown RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 DHODHQ02127 395 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 GCKRQ14397 625 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 SLC17A1Q14916 467 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 HAGHQ16775 308 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 SHROOM1Q2M3G4 852 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 HLA-BQ31612 363 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 NEPROQ6NW34 567 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 STEAP1BQ6NZ63 245 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 LRRC8BQ6P9F7 803 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 Q6ZSR9 355 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 PAQR9Q6ZVX9 377 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 TMEM110Q86TL2 294 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 GCNT2Q8N0V5 402 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 BANPQ8N9N5 519 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 RELL2Q8NC24 303 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 OR2T34Q8NGX1 318 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 WDR36Q8NI36 951 aaKnown RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 PNPLA2Q96AD5 504 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 PINX1Q96BK5 328 aaKnown RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 ALKBH3Q96Q83 286 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 KRT12Q99456 494 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 RBM24Q9BX46 236 aaKnown RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 TSPY26PQ9H489 355 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 MED20Q9H944 212 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 WDR76Q9H967 626 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 SDF2L1Q9HCN8 221 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 NLGN3Q9NZ94 848 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 XPO7Q9UIA9 1087 aaKnown RBP4.29□□□□□ -1.72
SCFD1-209ENST00000553280 PYGO1Q9Y3Y4 419 aa4.29□□□□□ -1.72
SCFD1-209ENST00000553280 PARD3Q8TEW0 1356 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 LOC390937A0A1W2PQ73 354 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 MEIOCA2RUB1 952 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 E2F3O00716 465 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 OR4F21O95013 312 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 MFN2O95140 757 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 CYP11B1P15538 503 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 HNMTP50135 292 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 SGSHP51688 502 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 CRYBA2P53672 197 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 HERVK_113P63132 956 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ERVK-8P63133 956 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 CYCSP99999 105 aaKnown RBP4.28□□□□□ -1.72
SCFD1-209ENST00000553280 PARP6Q2NL67 630 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 HKDC1Q2TB90 917 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ZNF699Q32M78 642 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ANKRD55Q3KP44 614 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ZNF876PQ49A33 203 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 NADK2Q4G0N4 442 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ADAMTSL4-AS1Q5T5F5 129 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 PWWP2BQ6NUJ5 590 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 KDELC1Q6UW63 502 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 C3P1Q6ZMU1 363 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 FRRS1Q6ZNA5 592 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 CUZD1Q86UP6 607 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 RANBP3LQ86VV4 465 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-209ENST00000553280 GPBP1Q86WP2 473 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 STKLD1Q8NE28 680 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 OR10G7Q8NGN6 311 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ZNF501Q96CX3 271 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-209ENST00000553280 ERVK-6Q9BXR3 956 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 RAB33BQ9H082 229 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 KCNK13Q9HB14 408 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 PLEKHA3Q9HB20 300 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 NMUR1Q9HB89 426 aa4.28□□□□□ -1.72
SCFD1-209ENST00000553280 FARSBQ9NSD9 589 aaKnown RBP4.28□□□□□ -1.72
SCFD1-209ENST00000553280 KDRP35968 1356 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 IGHV3-20A0A0C4DH32 117 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 GPR89AB7ZAQ6 455 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PRR23D1E9PI22 279 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 H0YCG3 227 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 H3BTX0 84 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 K7EQD1 137 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 MCF2LO15068 1137 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 NXPH2O95156 264 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 NXPH4O95158 308 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 GPR89BP0CG08 455 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PRR23D2P0DMB1 279 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 EPB41P11171 864 aaKnown RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PRG2P13727 222 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PSMA5P28066 241 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PPP2R1AP30153 589 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 FCGR2CP31995 323 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 PTGFRP43088 359 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 SNTB2Q13425 540 aaKnown RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 NFATC2Q13469 925 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 ZKSCAN8Q15776 578 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 FAM189A2Q15884 450 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 WLSQ5T9L3 541 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 NCR3LG1Q68D85 454 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 NIPAL3Q6P499 406 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 BHLHB9Q6PI77 547 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 CES3Q6UWW8 571 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 ERASQ7Z444 233 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 LHFPL4Q7Z7J7 247 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 CBWD2Q8IUF1 395 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 CHDHQ8NE62 594 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 FBXO25Q8TCJ0 367 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 C11orf52Q96A22 123 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms