RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PYROXD1Q8WU10 500 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 TANKQ92844 425 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 RIT1Q92963 219 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 RGMAQ96B86 450 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 NXNL1Q96CM4 212 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 NTNG2Q96CW9 530 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 ZNF597Q96LX8 424 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 RILPQ96NA2 401 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 GNRHR2Q96P88 292 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 ALPK1Q96QP1 1244 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 UGT2B28Q9BY64 529 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 PRDM14Q9GZV8 571 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 QPCTLQ9NXS2 382 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 GRHL1Q9NZI5 618 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 CNIH4Q9P003 139 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 PCDHGB3Q9Y5G1 929 aa14.15□□□□□ -0.14
CLSTN3-213ENST00000541953 ZANQ9Y493 2812 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 IQANK1A0A1B0GTG1 560 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 DVL2O14641 736 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 PGRMC2O15173 223 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 OR10H2O60403 315 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 TRAPPC6AO75865 159 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 S100BP04271 92 aaPredicted RBP14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 HPNP05981 417 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 NR2F6P10588 404 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 SERPINB3P29508 390 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 SLCO1A2P46721 670 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 CDK9P50750 372 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 NEK2P51955 445 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 SLMAPQ14BN4 828 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 RPS6KA2Q15349 733 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 NNATQ16517 81 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 KBTBD12Q3ZCT8 623 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 MYLK4Q86YV6 388 aaPredicted RBP14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 ZNF615Q8N8J6 731 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 C9orf106Q8NAJ2 232 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 SPPL2AQ8TCT8 520 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 FAM222BQ8WU58 562 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 KCTD4Q8WVF5 259 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 UBE2E3Q969T4 207 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 ART5Q96L15 291 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 PLEKHF2Q9H8W4 249 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 PHF11Q9UIL8 331 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 CAMK2AQ9UQM7 478 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 C15orf41Q9Y2V0 281 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 ABCA2Q9BZC7 2435 aa14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 FN1P02751 2386 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-213ENST00000541953 FAM47E-STBD1D6RA91 191 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 BMP7P18075 431 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 TIMP3P35625 211 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 PIK3CBP42338 1070 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 DGKQP52824 942 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 FOXF2Q12947 444 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 DAZAP2Q15038 168 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 POU4F3Q15319 338 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 TRADDQ15628 312 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 WIPI1Q5MNZ9 446 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 UBAP2Q5T6F2 1119 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 VASNQ6EMK4 673 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 LACC1Q8IV20 430 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 CTAGE3PQ8IX95 158 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 PPM1NQ8N819 430 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 GOT1L1Q8NHS2 421 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 STAG3L4Q8TBR4 150 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 ADIPOR1Q96A54 375 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 MBD6Q96DN6 1003 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 WDYHV1Q96HA8 205 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 ANGPTL4Q9BY76 406 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 CXorf21Q9HAI6 301 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 MS4A12Q9NXJ0 267 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 RNF11Q9Y3C5 154 aa14.13□□□□□ -0.15
CLSTN3-213ENST00000541953 C2orf92A0A1B0GVN3 265 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 HMX2A2RU54 273 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 ANKRD33BA6NCL7 494 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 C2orf72A6NCS6 295 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 AHRRA9YTQ3 701 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 EEF1E1-BLOC1S5C9J1V9 151 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 GNB5O14775 395 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 ZSCAN12O43309 604 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 EEF1E1O43324 174 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 SIX3O95343 332 aaPredicted RBP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 FAM58BPP0C7Q3 252 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 EPB42P16452 691 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 SERPINB1P30740 379 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 BUD31P41223 144 aaPredicted RBP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 CASP3P42574 277 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 NAGLUP54802 743 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 DUSP2Q05923 314 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 CPSF6Q16630 551 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 DEFB113Q30KQ7 82 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 NSUN5P2Q63ZY6 315 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 C3orf62Q6ZUJ4 267 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 RAPH1Q70E73 1250 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 YRDCQ86U90 279 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 WDR20Q8TBZ3 569 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 CDKL2Q92772 493 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 CDK15Q96Q40 435 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 TRIB1Q96RU8 372 aa14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 DDX31Q9H8H2 851 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-213ENST00000541953 JKAMPQ9P055 326 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms