RNA–Protein interactions for RNA: ENST00000522136.5

CLK4-210, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,955 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-210ENST00000522136 MC3RP41968 323 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 EMP2P54851 167 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 PSME3P61289 254 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 RPS18P62269 152 aaKnown RBP12.52□□□□□ -0.4
CLK4-210ENST00000522136 SELPLGQ14242 412 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 RABL3Q5HYI8 236 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 NANOGP8Q6NSW7 305 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 C8orf82Q6P1X6 216 aaPredicted RBP12.52□□□□□ -0.4
CLK4-210ENST00000522136 HACD2Q6Y1H2 254 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 ESX1Q8N693 406 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 RBM18Q96H35 190 aaKnown RBP12.52□□□□□ -0.4
CLK4-210ENST00000522136 DGAT2Q96PD7 388 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 GPATCH1Q9BRR8 931 aaKnown RBP12.52□□□□□ -0.4
CLK4-210ENST00000522136 BTBD10Q9BSF8 475 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 CRB3Q9BUF7 120 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 NANOGQ9H9S0 305 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 PACSIN3Q9UKS6 424 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 VPS4AQ9UN37 437 aa12.52□□□□□ -0.4
CLK4-210ENST00000522136 TCRBV16S1A1N1A0A5B0 115 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 STMND1H3BQB6 276 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 ATP1B1P05026 303 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 UMODP07911 640 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 F8A1P23610 371 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 STT3AP46977 705 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 CASP9P55211 416 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 MTPNP58546 118 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 LRRC74AQ0VAA2 488 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 MGAT2Q10469 447 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 SERTAD2Q14140 314 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 RTP5Q14D33 572 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 TGIF1Q15583 401 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 PRICKLE4Q2TBC4 344 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 TRMT12Q53H54 448 aaKnown RBP12.52□□□□□ -0.41
CLK4-210ENST00000522136 RUNDC3AQ59EK9 446 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 CPZQ66K79 652 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 ST13P4Q8IZP2 240 aaPredicted RBP12.52□□□□□ -0.41
CLK4-210ENST00000522136 OR7G2Q8NG99 324 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 PSMA8Q8TAA3 256 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 PNPT1Q8TCS8 783 aaKnown RBP12.52□□□□□ -0.41
CLK4-210ENST00000522136 ELP4Q96EB1 424 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 ANKRD27Q96NW4 1050 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 SLC35A5Q9BS91 424 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 SCNM1Q9BWG6 230 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 IKZF5Q9H5V7 419 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 WDR54Q9H977 334 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 MAT2BQ9NZL9 334 aa12.52□□□□□ -0.41
CLK4-210ENST00000522136 IGHV3-20A0A0C4DH32 117 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 LOC101059948A0A1B0GTJ6 334 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 HRKO00198 91 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 HNRNPCL1O60812 293 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 ALOX12BO75342 701 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 ZCCHC18P0CG32 403 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 TNNI3P19429 210 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 SLC6A2P23975 617 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 CCT3P49368 545 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 SPDYE7PQ495Y7 208 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 ZNF628Q5EBL2 1059 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 C16orf89Q6UX73 402 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 SZRD1Q7Z422 152 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 PGAM4Q8N0Y7 254 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 RIT1Q92963 219 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 FAM120BQ96EK7 910 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 PHF12Q96QT6 1004 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 C1orf21Q9H246 121 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 CXorf21Q9HAI6 301 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 NEUROD4Q9HD90 331 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 GMPR2Q9P2T1 348 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 NXT1Q9UKK6 140 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 WASF3Q9UPY6 502 aa12.51□□□□□ -0.41
CLK4-210ENST00000522136 FARSAQ9Y285 508 aaKnown RBP12.51□□□□□ -0.41
CLK4-210ENST00000522136 RNF103-CHMP3A0A140T963 221 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 CLIC1O00299 241 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 NPPAP01160 153 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 UQCRC2P22695 453 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 DLSTP36957 453 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 STAT5AP42229 794 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 RASSF2P50749 326 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 PGDP52209 483 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 SLC7A2P52569 658 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 PRKAG1P54619 331 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 MAP7Q14244 749 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 ZNF267Q14586 743 aaPredicted RBP12.5□□□□□ -0.41
CLK4-210ENST00000522136 EXOSC7Q15024 291 aaKnown RBP12.5□□□□□ -0.41
CLK4-210ENST00000522136 IGF2-ASQ6U949 168 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 ASRGL1Q7L266 308 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 ANKRD37Q7Z713 158 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 SLC15A3Q8IY34 581 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 C10orf111Q8N326 155 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 OR2Y1Q8NGV0 311 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 DNAJB8Q8NHS0 232 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 ZFP90Q8TF47 636 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 PTPMT1Q8WUK0 201 aaPredicted RBP12.5□□□□□ -0.41
CLK4-210ENST00000522136 NKD1Q969G9 470 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 C8orf44Q96CB5 159 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 CLPTM1LQ96KA5 538 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 CDRT15Q96T59 188 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 CPPED1Q9BRF8 314 aaPredicted RBP12.5□□□□□ -0.41
CLK4-210ENST00000522136 CADM1Q9BY67 442 aaKnown RBP12.5□□□□□ -0.41
CLK4-210ENST00000522136 LRMDAQ9H2I8 198 aa12.5□□□□□ -0.41
CLK4-210ENST00000522136 TPT1P8Q9HAU6 139 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms