RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C9orf40Q8IXQ3 194 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 MDS2Q8NDY4 140 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 FAM76AQ8TAV0 307 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 CNRIP1Q96F85 164 aaPredicted RBP13.7□□□□□ -0.22
USP4-212ENST00000486549 C5orf34Q96MH7 638 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 CXorf21Q9HAI6 301 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 MYNNQ9NPC7 610 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 GIMAP4Q9NUV9 329 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.7□□□□□ -0.22
USP4-212ENST00000486549 MYOTQ9UBF9 498 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 ENTPD4Q9Y227 616 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 NTNG1Q9Y2I2 539 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 ATP6AP2A0A1C7CYW4 349 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 TMEM200CA6NKL6 621 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 LSM1O15116 133 aaKnown RBP13.69□□□□□ -0.22
USP4-212ENST00000486549 ATP6AP2O75787 350 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 CD46P15529 392 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 TACR1P25103 407 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 GSTM5P46439 218 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 BST1Q10588 318 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 KIAA0040Q15053 153 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 LTB4RQ15722 352 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 PDCD2Q16342 344 aaPredicted RBP13.69□□□□□ -0.22
USP4-212ENST00000486549 FAM71E1Q6IPT2 247 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 FAM111BQ6SJ93 734 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 FAM180AQ6UWF9 173 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 SLC29A4Q7RTT9 530 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 TICAM1Q8IUC6 712 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 HOMEZQ8IX15 550 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 ARMC10Q8N2F6 343 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 LRRC25Q8N386 305 aaPredicted RBP13.69□□□□□ -0.22
USP4-212ENST00000486549 HORMAD2Q8N7B1 307 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 GOLGA6L1Q8N7Z2 621 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 ADCY4Q8NFM4 1077 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 OR5L2Q8NGL0 311 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 OR8K3Q8NH51 312 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 CLHC1Q8NHS4 586 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 ASB15Q8WXK1 588 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 GFM2Q969S9 779 aaKnown RBP13.69□□□□□ -0.22
USP4-212ENST00000486549 PPP1R36Q96LQ0 422 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 C3orf30Q96M34 536 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 RASL10BQ96S79 203 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 C20orf27Q9GZN8 174 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 MIEF1Q9NQG6 463 aa13.69□□□□□ -0.22
USP4-212ENST00000486549 YARS2Q9Y2Z4 477 aaKnown RBP13.69□□□□□ -0.22
USP4-212ENST00000486549 NPIPB8E9PQR5 432 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 PEX11AO75192 247 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 SLC25A12O75746 678 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 NEURL1O76050 574 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 LRATO95237 230 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 CLPSP04118 112 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 ATP1B1P05026 303 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 JUNP05412 331 aaKnown RBP13.68□□□□□ -0.22
USP4-212ENST00000486549 SDC1P18827 310 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 DDCP20711 480 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 TRHRP34981 398 aaPredicted RBP13.68□□□□□ -0.22
USP4-212ENST00000486549 SOX3P41225 446 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 HLCSP50747 726 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 SLC37A1P57057 533 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 PMP22Q01453 160 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 SRSF11Q05519 484 aaKnown RBP13.68□□□□□ -0.22
USP4-212ENST00000486549 MAPKAPK3Q16644 382 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 RFTN2Q52LD8 501 aaPredicted RBP13.68□□□□□ -0.22
USP4-212ENST00000486549 TTMPQ5BVD1 217 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 XKR7Q5GH72 579 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 FHL5Q5TD97 284 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 IL20RBQ6UXL0 311 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 CCDC116Q8IYX3 515 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 CYP4Z2PQ8N1L4 340 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 VWA5B2Q8N398 1253 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 GRHL3Q8TE85 626 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 TMEM125Q96AQ2 219 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 METTL2AQ96IZ6 378 aaKnown RBP13.68□□□□□ -0.22
USP4-212ENST00000486549 EGLN2Q96KS0 407 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 ATP6V1G3Q96LB4 118 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 PPP3R2Q96LZ3 170 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 ZNF681Q96N22 645 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 TSSK3Q96PN8 268 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 BBS4Q96RK4 519 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 SORT1Q99523 831 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 C1orf50Q9BV19 199 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 SLC35C2Q9NQQ7 365 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 AGPAT4Q9NRZ5 378 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 MAT2BQ9NZL9 334 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 ERVK-11Q9UQG0 969 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 RAP2CQ9Y3L5 183 aa13.68□□□□□ -0.22
USP4-212ENST00000486549 RP1L1Q8IWN7 2480 aaPredicted RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 A8MVJ9 347 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 AKAP10O43572 662 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 OR6B1O95007 311 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 RASAL1O95294 804 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 SP1P08047 785 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 RPL14P50914 215 aaKnown RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 SLC18A1P54219 525 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 MRPS35P82673 323 aaKnown RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 FUT7Q11130 342 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 EXOSC7Q15024 291 aaKnown RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 EBPQ15125 230 aaKnown RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 PRSS53Q2L4Q9 553 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 PRICKLE4Q2TBC4 344 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms