RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 SHROOM1Q2M3G4 852 aaPredicted RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 LCE1CQ5T751 118 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 LCE1BQ5T7P3 118 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 ARMCX5Q6P1M9 558 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 DLEU7Q6UYE1 221 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 ASRGL1Q7L266 308 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 PEX5LQ8IYB4 626 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 CHDHQ8NE62 594 aaPredicted RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 OR4F5Q8NH21 305 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 FLVCR1-AS1Q8TAF5 88 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 ZNF560Q96MR9 790 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 TEX13AQ9BXU3 409 aaPredicted RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 FAM120CQ9NX05 1096 aaKnown RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 ERVK-18Q9QC07 812 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 EIF3KQ9UBQ5 218 aaKnown RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 FBXO7Q9Y3I1 522 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 KNSTRNQ9Y448 316 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 TEX264Q9Y6I9 313 aa3.36□□□□□ -1.87
LRCH3-211ENST00000466054 DHX29Q7Z478 1369 aaKnown RBP3.36□□□□□ -1.87
LRCH3-211ENST00000466054 TEX48A0A1B0GUV7 120 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 TRIM64A6NGJ6 449 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 TRIM64BA6NI03 449 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 TLR4O00206 839 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 HSF2BPO75031 334 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 CXCL14O95715 111 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 MELTFP08582 738 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 FCGR3AP08637 254 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 HIST1H2AGP0C0S8 130 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 CCDC159P0C7I6 412 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 P4HA1P13674 534 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 CALML3P27482 149 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 PPP2R1BP30154 601 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 RPL34P49207 117 aaKnown RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 NDST1P52848 882 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 GALK2Q01415 458 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 GFPT1Q06210 699 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 ITPK1Q13572 414 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 TMEM44Q2T9K0 475 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 GPAT3Q53EU6 434 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 WDR25Q64LD2 544 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 MARCH9Q86YJ5 346 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 CCDC71Q8IV32 467 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 SLC39A11Q8N1S5 342 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 COLGALT1Q8NBJ5 622 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 HIST1H2ACQ93077 130 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 DTD2Q96FN9 168 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 RBM18Q96H35 190 aaKnown RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 Q9HAA7 133 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 ELL3Q9HB65 397 aaPredicted RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 SLC25A19Q9HC21 320 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 ZNF581Q9P0T4 197 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 TUBGCP4Q9UGJ1 667 aa3.35□□□□□ -1.87
LRCH3-211ENST00000466054 ZNF346Q9UL40 294 aaKnown RBP3.35□□□□□ -1.87
LRCH3-211ENST00000466054 MACROD2A1Z1Q3 448 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 SLC9B1P1A6NJY1 282 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 SRRM5B3KS81 715 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 RTL8CO15255 209 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 BCL2L11O43521 198 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 GPRIN2O60269 458 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 TKTL1P51854 596 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 AP1B1Q10567 949 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 KLF5Q13887 457 aaPredicted RBP3.34□□□□□ -1.87
LRCH3-211ENST00000466054 C15orf32Q32M92 178 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 ANKRD55Q3KP44 614 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 HERC4Q5GLZ8 1057 aaPredicted RBP3.34□□□□□ -1.87
LRCH3-211ENST00000466054 PRAMEF7Q5VXH5 474 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 SLC22A16Q86VW1 577 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 LINC00518Q8N0U6 118 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 OR4Q3Q8NH05 313 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 NTNG2Q96CW9 530 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 COG3Q96JB2 828 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 ABCG4Q9H172 646 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 CARD9Q9H257 536 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 DCTPP1Q9H773 170 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 AMBNQ9NP70 447 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 SEC14L4Q9UDX3 406 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 IL19Q9UHD0 177 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 ENTPD4Q9Y227 616 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 SPAG9O60271 1321 aaKnown RBP3.34□□□□□ -1.87
LRCH3-211ENST00000466054 AFF2P51816 1311 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 FAM205AQ6ZU69 1335 aa3.34□□□□□ -1.87
LRCH3-211ENST00000466054 A0A0A6YYD4 124 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 E2F3O00716 465 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 SH2D1BO14796 132 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 REC8O95072 547 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 HSD17B1P14061 328 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 BCL3P20749 454 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 MARCKSP29966 332 aaPredicted RBP3.33□□□□□ -1.88
LRCH3-211ENST00000466054 PITPNBP48739 271 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 ZNF131P52739 623 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 TRA2BP62995 288 aaKnown RBP3.33□□□□□ -1.88
LRCH3-211ENST00000466054 CYLC2Q14093 348 aaPredicted RBP3.33□□□□□ -1.88
LRCH3-211ENST00000466054 UNC50Q53HI1 259 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 NHLRC3Q5JS37 347 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 LEMD1Q68G75 181 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 STEAP1BQ6NZ63 245 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 RFWD3Q6PCD5 774 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 REG3GQ6UW15 175 aa3.33□□□□□ -1.88
LRCH3-211ENST00000466054 ABRAXAS1Q6UWZ7 409 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms