RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 DNASE1L2Q92874 299 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 SLC38A4Q969I6 547 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 GTPBP3Q969Y2 492 aaKnown RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 YIPF6Q96EC8 236 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 CHFRQ96EP1 664 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 SH3YL1Q96HL8 342 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 COX14Q96I36 57 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PRAP1Q96NZ9 151 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 MAPKAP1Q9BPZ7 522 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 RHBGQ9H310 441 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 CXorf36Q9H7Y0 433 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PRSS16Q9NQE7 514 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 POLE4Q9NR33 117 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PHPT1Q9NRX4 125 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 CLDND1Q9NY35 253 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 ACSL5Q9ULC5 683 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 EDARQ9UNE0 448 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 ERGIC3Q9Y282 383 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 B3GNT3Q9Y2A9 372 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 TMEM5Q9Y2B1 443 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 MRPS7Q9Y2R9 242 aaKnown RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 A0A0X1KG70 313 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 A8MVJ9 347 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 LCKP06239 509 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 BCHEP06276 602 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 POU1F1P28069 291 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 ARFIP1P53367 373 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 TP53BP2Q13625 1128 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 GANABQ14697 944 aaKnown RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 METRNLQ641Q3 311 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 LAIR1Q6GTX8 287 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 Q6ZPB1 254 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 LINC00299Q6ZSB3 139 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 RIPOR3Q96MK2 946 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF607Q96SK3 696 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 TMEM121BQ9BXQ6 578 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PITHD1Q9GZP4 211 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 AMBNQ9NP70 447 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PLCXD1Q9NUJ7 323 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 CUEDC1Q9NWM3 386 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 OBP2AQ9NY56 170 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 SLC23A2Q9UGH3 650 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PRAMEF33A0A0G2JMD5 474 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 CLCA1A8K7I4 914 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 EFCAB9A8MZ26 197 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 NDUFS4O43181 175 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 PRAMEF10O60809 474 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 SSR2P43308 183 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 INAVAQ3KP66 663 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 VN1R5Q7Z5H4 357 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 IGFN1Q86VF2 1251 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 MMP21Q8N119 569 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D19Q8N5T2 526 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 OR14C36Q8NHC7 312 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 RHOXF1Q8NHV9 184 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 NDNFQ8TB73 568 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 TM4SF18Q96CE8 201 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 LGALS12Q96DT0 336 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 MRPL38Q96DV4 380 aaKnown RBP9.15□□□□□ -0.95
COL6A3-204ENST00000392003 C12orf66Q96MD2 445 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 MYADMQ96S97 322 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 RHNO1Q9BSD3 238 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 WDR26Q9H7D7 661 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 THAP10Q9P2Z0 257 aaPredicted RBP9.15□□□□□ -0.95
COL6A3-204ENST00000392003 PSORS1C1Q9UIG5 152 aa9.15□□□□□ -0.95
COL6A3-204ENST00000392003 A0A1W2PP55 124 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FEZF1A0PJY2 475 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 C12orf71A8MTZ7 269 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 J3KTA2 159 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TSPAN4O14817 238 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 MPZL2O60487 215 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PAK4O96013 591 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PPP2R1BP30154 601 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 XCR1P46094 333 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 GSTM5P46439 218 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 REEP5Q00765 189 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 SYT16Q17RD7 645 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 WSCD2Q2TBF2 565 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ADPRMQ3LIE5 342 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FAM180BQ6P0A1 224 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PARM1Q6UWI2 310 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FAM92BQ6ZTR7 304 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 C6orf120Q7Z4R8 191 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CCDC71Q8IV32 467 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 DNAJC22Q8N4W6 341 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 AQP11Q8NBQ7 271 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 OR9Q2Q8NGE9 314 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 OR4C15Q8NGM1 316 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 RASSF5Q8WWW0 418 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NEURL3Q96EH8 262 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PDXPQ96GD0 296 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FAIM2Q9BWQ8 316 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CDADC1Q9BWV3 514 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ATP13A2Q9NQ11 1180 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CLN6Q9NWW5 311 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TRPC4Q9UBN4 977 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TRAV20A0A0B4J274 112 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 A0A1W2PQ72 361 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 OR2A25A4D2G3 310 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms