RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GRHL3Q8TE85 626 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 TSEN15Q8WW01 171 aaKnown RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 RNFT2Q96EX2 444 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 FGF22Q9HCT0 170 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 GIN1Q9NXP7 522 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 IL20RAQ9UHF4 553 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 TOX3O15405 576 aaPredicted RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 CNOT3O75175 753 aaKnown RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 HLA-DQB2P05538 268 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 TNFRSF1AP19438 455 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 HTR3AP46098 478 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 OLR1P78380 273 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SQLEQ14534 574 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 NKAPLQ5M9Q1 402 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 BEND4Q6ZU67 534 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 MAMDC2Q7Z304 686 aaPredicted RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF276Q8N554 614 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SEMA4DQ92854 862 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 MRPL57Q9BQC6 102 aaKnown RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 LRRC61Q9BV99 259 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 STRA6Q9BX79 667 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 TEX10Q9NXF1 929 aaPredicted RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 OR6C65A6NJZ3 312 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 PRRT4C9JH25 899 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 TRIM77I1YAP6 450 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 I6L893 689 aaPredicted RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 HCRTO43612 131 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SLC1A2P43004 574 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SLAMF1Q13291 335 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 ADAMTSL4Q6UY14 1074 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 KLHL36Q8N4N3 616 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SLC35F5Q8WV83 523 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 BLOC1S6Q9UL45 172 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 GMPPBQ9Y5P6 360 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 UGT2B7P16662 529 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TPSB2P20231 275 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SLC6A8P48029 635 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CSNK1A1P48729 337 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CSNK2BP67870 215 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TCF15Q12870 199 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 MPP2Q14168 576 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TPSAB1Q15661 275 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CEBPEQ15744 281 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ABHD17AQ96GS6 310 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 MSLNLQ96KJ4 702 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 KLF6Q99612 283 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 DDA1Q9BW61 102 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 RXFP3Q9NSD7 469 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 DCTN4Q9UJW0 460 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PCOLCE2Q9UKZ9 415 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TP53TG5Q9Y2B4 290 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 NDUFAF1Q9Y375 327 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PSAT1Q9Y617 370 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 LINC01387J3KSC0 135 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 WRBO00258 174 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 LYPLA1O75608 230 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 RLN1P04808 185 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ANXA2P07355 339 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 IL4RP24394 825 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 GABRB2P47870 512 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 HOXA4Q00056 320 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 KPNB1Q14974 876 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SNAPC1Q16533 368 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 LILRA6Q6PI73 481 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PIGXQ8TBF5 258 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 C16orf78Q8WTQ4 265 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ZBTB9Q96C00 473 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 COG8Q96MW5 612 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SLC22A12Q96S37 553 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CLK4Q9HAZ1 481 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CHST10O43529 356 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 OR2T1O43869 369 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PEX11AO75192 247 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CLDN14O95500 239 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 JUNP05412 331 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ADORA3P0DMS8 318 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 RPL7AP62424 266 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 HERVK_113P63132 956 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ERVK-8P63133 956 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TLE3Q04726 772 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 GTF2H2Q13888 395 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CTC1Q2NKJ3 1217 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SLC36A2Q495M3 483 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF658BQ4V348 819 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ANKRD34AQ69YU3 496 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 GTF2H2CQ6P1K8 395 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 C16orf89Q6UX73 402 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SPERTQ8NA61 448 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 OR2A12Q8NGT7 310 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 LRTOMTQ8WZ04 291 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 DNAJC19Q96DA6 116 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ORAI3Q9BRQ5 295 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ERVK-6Q9BXR3 956 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ING4Q9UNL4 249 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 ERVK-19Q9WJR5 959 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 B3GALT5Q9Y2C3 310 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PRR23D1E9PI22 279 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 DNAJA2O60884 412 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 GATBO75879 557 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CALCAP01258 141 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms