RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GIFP27352 417 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 RPL35P42766 123 aaKnown RBP12.8□□□□□ -0.36
SKA3-201ENST00000298260 LIMS1P48059 325 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 DSTNP60981 165 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 BEX3Q00994 111 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 ACSM2AQ08AH3 577 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 NTRK2Q16620 822 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 SLC5A12Q1EHB4 618 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 PLK5Q496M5 336 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 SFRP5Q5T4F7 317 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 GPRC6AQ5T6X5 926 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 ACSM2BQ68CK6 577 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 ADGRF3Q8IZF5 1079 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 MMP21Q8N119 569 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 ZNF687Q8N1G0 1237 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 FTMTQ8N4E7 242 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 SRFBP1Q8NEF9 429 aaKnown RBP12.8□□□□□ -0.36
SKA3-201ENST00000298260 OR2T35Q8NGX2 323 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 NEIL3Q8TAT5 605 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 SMG7Q92540 1137 aaKnown RBP12.8□□□□□ -0.36
SKA3-201ENST00000298260 THAP7Q9BT49 309 aaPredicted RBP12.8□□□□□ -0.36
SKA3-201ENST00000298260 POLR2J3Q9H1A7 115 aaKnown RBP12.8□□□□□ -0.36
SKA3-201ENST00000298260 MVB12BQ9H7P6 319 aa12.8□□□□□ -0.36
SKA3-201ENST00000298260 SLC22A23A1A5C7 686 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 PRR23AA6NEV1 266 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 IFNA16P05015 189 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 ANXA4P09525 319 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 CD3GP09693 182 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 CR2P20023 1033 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 NUP62P37198 522 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 AKR1D1P51857 326 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 KIAA1024LP59773 190 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 COL9A2Q14055 689 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 SYT14P1Q58G82 188 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 FAM27D1Q5T7N8 215 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 GPR135Q8IZ08 494 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 OR8J2Q8NGG1 315 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 AP3S1Q92572 193 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 POP5Q969H6 163 aaKnown RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 KIAA1143Q96AT1 154 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 TMEM175Q9BSA9 504 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 GSX2Q9BZM3 304 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 RANBP3Q9H6Z4 567 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 IFT46Q9NQC8 304 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 ENAMQ9NRM1 1142 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 IMP3Q9NV31 184 aaKnown RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 DPM1O60762 260 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 CLDN7O95471 211 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 OSMP13725 252 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 TACR2P21452 398 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 AOAHP28039 575 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 MAPK1P28482 360 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 BMP8BP34820 402 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 SOAT1P35610 550 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 B2MP61769 119 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 CDK6Q00534 326 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 DOC2AQ14183 400 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 ST3GAL2Q16842 350 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 COL28A1Q2UY09 1125 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 ZNF791Q3KP31 576 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 C6orf132Q5T0Z8 1188 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 METTL2BQ6P1Q9 378 aaKnown RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 QSOX2Q6ZRP7 698 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 UBE2R2Q712K3 238 aaPredicted RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 BMP8AQ7Z5Y6 402 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 GPR142Q7Z601 462 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 MON1AQ86VX9 555 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 SGTBQ96EQ0 304 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 FOLH1BQ9HBA9 442 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 IL26Q9NPH9 171 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 FAM120CQ9NX05 1096 aaKnown RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 OR6C2Q9NZP2 312 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 MRPL15Q9P015 296 aaKnown RBP12.79□□□□□ -0.36
SKA3-201ENST00000298260 ENPP4Q9Y6X5 453 aa12.79□□□□□ -0.36
SKA3-201ENST00000298260 SCAMP2O15127 329 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 SEPT4O43236 478 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 HPXP02790 462 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 EIF4EP06730 217 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 PTNP21246 168 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ALDH9A1P49189 494 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 TPMTP51580 245 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 WNT4P56705 351 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 RFLNAQ6ZTI6 216 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 LUZP2Q86TE4 346 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 COQ8AQ8NI60 647 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 CHTF18Q8WVB6 975 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 P2RY13Q9BPV8 354 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 REG4Q9BYZ8 158 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 METTL17Q9H7H0 456 aaPredicted RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 BRD7Q9NPI1 651 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 SLC35C2Q9NQQ7 365 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 ST3GAL5Q9UNP4 418 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 FCF1Q9Y324 198 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 HELZP42694 1942 aaKnown RBP12.78□□□□□ -0.36
SKA3-201ENST00000298260 A0A1B0GVM2 712 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 SMIM35A0A1B0GVV1 85 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 hCG_1807616A0A1W2PRN6 198 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 K7ERQ8 282 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 M0R233 179 aa12.78□□□□□ -0.36
SKA3-201ENST00000298260 GPR171O14626 319 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms