RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 ABCC3O15438 1527 aa8.4□□□□□ -1.06
VPS33B-203ENST00000554264 NCOA2Q15596 1464 aa8.4□□□□□ -1.06
VPS33B-203ENST00000554264 FAM135BQ49AJ0 1406 aa8.4□□□□□ -1.06
VPS33B-203ENST00000554264 PLPP7Q8NBV4 271 aa8.4□□□□□ -1.06
VPS33B-203ENST00000554264 OSBPL3Q9H4L5 887 aa8.4□□□□□ -1.06
VPS33B-203ENST00000554264 STRCP1A6NGW2 1772 aa8.4□□□□□ -1.07
VPS33B-203ENST00000554264 CC2D2BQ6DHV5 1058 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 TXNDC2Q86VQ3 553 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 CCDC125Q86Z20 511 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 CALR3Q96L12 384 aaKnown RBP8.39□□□□□ -1.07
VPS33B-203ENST00000554264 ZFP42Q96MM3 310 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 DOLKQ9UPQ8 538 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 EID1Q9Y6B2 187 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 SLIT1O75093 1534 aa8.39□□□□□ -1.07
VPS33B-203ENST00000554264 ARHGAP23Q9P227 1491 aa8.38□□□□□ -1.07
VPS33B-203ENST00000554264 SKIP12755 728 aa8.38□□□□□ -1.07
VPS33B-203ENST00000554264 PURBQ96QR8 312 aaKnown RBP8.38□□□□□ -1.07
VPS33B-203ENST00000554264 EIF2AK4Q9P2K8 1649 aaKnown RBP8.38□□□□□ -1.07
VPS33B-203ENST00000554264 MAST1Q9Y2H9 1570 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 ADH1AP07327 375 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 LTKP29376 864 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 RELBQ01201 579 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 OXLD1Q5BKU9 147 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 C6orf118Q5T5N4 469 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 POTEAQ6S8J7 498 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 LINC00528Q8N1L1 170 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 DEPDC4Q8N2C3 294 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 C1orf115Q9H7X2 142 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 ZNF395Q9H8N7 513 aaPredicted RBP8.37□□□□□ -1.07
VPS33B-203ENST00000554264 TFIP11Q9UBB9 837 aaKnown RBP8.37□□□□□ -1.07
VPS33B-203ENST00000554264 UBR1Q8IWV7 1749 aa8.37□□□□□ -1.07
VPS33B-203ENST00000554264 DHX57Q6P158 1386 aaKnown RBP8.36□□□□□ -1.07
VPS33B-203ENST00000554264 SNRPBP14678 240 aaKnown RBP8.36□□□□□ -1.07
VPS33B-203ENST00000554264 MAP7D1Q3KQU3 841 aa8.36□□□□□ -1.07
VPS33B-203ENST00000554264 NFATC2IPQ8NCF5 419 aa8.36□□□□□ -1.07
VPS33B-203ENST00000554264 ARHGAP31Q2M1Z3 1444 aa8.36□□□□□ -1.07
VPS33B-203ENST00000554264 TMEM94Q12767 1356 aa8.35□□□□□ -1.07
VPS33B-203ENST00000554264 LRRC9Q6ZRR7 1453 aa8.35□□□□□ -1.07
VPS33B-203ENST00000554264 STAU1O95793 577 aaKnown RBP8.35□□□□□ -1.07
VPS33B-203ENST00000554264 KCNA6P17658 529 aa8.35□□□□□ -1.07
VPS33B-203ENST00000554264 TSEN34Q9BSV6 310 aaKnown RBP8.35□□□□□ -1.07
VPS33B-203ENST00000554264 TMEM2Q9UHN6 1383 aa8.35□□□□□ -1.07
VPS33B-203ENST00000554264 MROH1Q8NDA8 1641 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 PALM3A6NDB9 673 aaPredicted RBP8.34□□□□□ -1.07
VPS33B-203ENST00000554264 USP17L5A8MUK1 530 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 SPINT1O43278 529 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 ATP9BO43861 1147 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 BMP2P12643 396 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 PTGIRP43119 386 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 USP4Q13107 963 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 NCOA4Q13772 614 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 PPP1R12CQ9BZL4 782 aa8.34□□□□□ -1.07
VPS33B-203ENST00000554264 DUOX2Q9NRD8 1548 aa8.34□□□□□ -1.08
VPS33B-203ENST00000554264 ZNF787Q6DD87 383 aa8.33□□□□□ -1.08
VPS33B-203ENST00000554264 TRIM47Q96LD4 638 aa8.33□□□□□ -1.08
VPS33B-203ENST00000554264 INSM2Q96T92 566 aaPredicted RBP8.33□□□□□ -1.08
VPS33B-203ENST00000554264 ERBINQ96RT1 1412 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 XIRP1Q702N8 1843 aaKnown RBP8.32□□□□□ -1.08
VPS33B-203ENST00000554264 A0A1W2PRU2 124 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 SOBPA7XYQ1 873 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 ATP5J2-PTCD1G3V325 749 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 CTSOP43234 321 aaPredicted RBP8.32□□□□□ -1.08
VPS33B-203ENST00000554264 SCARF1Q14162 830 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 PCDHGA11Q9Y5H2 935 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 MAFBQ9Y5Q3 323 aaPredicted RBP8.32□□□□□ -1.08
VPS33B-203ENST00000554264 ROBO1Q9Y6N7 1651 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 PRDM15P57071 1507 aaPredicted RBP8.32□□□□□ -1.08
VPS33B-203ENST00000554264 MSH6P52701 1360 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 JCADQ9P266 1359 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 NKTRP30414 1462 aaKnown RBP8.32□□□□□ -1.08
VPS33B-203ENST00000554264 CEP152O94986 1710 aa8.32□□□□□ -1.08
VPS33B-203ENST00000554264 SOS2Q07890 1332 aaPredicted RBP8.31□□□□□ -1.08
VPS33B-203ENST00000554264 MYOM3Q5VTT5 1437 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 EFCAB6Q5THR3 1501 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 USP17L3A6NCW0 530 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 USP17L4A6NCW7 530 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 C11orf95C9JLR9 678 aaPredicted RBP8.31□□□□□ -1.08
VPS33B-203ENST00000554264 MYCP01106 439 aaPredicted RBP8.31□□□□□ -1.08
VPS33B-203ENST00000554264 CFAP70Q5T0N1 1121 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 USP17L2Q6R6M4 530 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 USP17L1Q7RTZ2 530 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 PLEKHM2Q8IWE5 1019 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 RAB6BQ9NRW1 208 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 KANK1Q14678 1352 aa8.31□□□□□ -1.08
VPS33B-203ENST00000554264 KDM5AP29375 1690 aaKnown RBP8.3□□□□□ -1.08
VPS33B-203ENST00000554264 PIK3C2BO00750 1634 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 UPP2O95045 317 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 EML3Q32P44 896 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 SENP2Q9HC62 589 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 ARHGEF10LQ9HCE6 1279 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 SLAIN2Q9P270 581 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 KIF15Q9NS87 1388 aa8.3□□□□□ -1.08
VPS33B-203ENST00000554264 ZBTB7BO15156 539 aaPredicted RBP8.29□□□□□ -1.08
VPS33B-203ENST00000554264 LZTS3O60299 673 aaPredicted RBP8.29□□□□□ -1.08
VPS33B-203ENST00000554264 IL2RAP01589 272 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 SCNN1DP51172 638 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 IDI1Q13907 227 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 KANK4Q5T7N3 995 aaPredicted RBP8.29□□□□□ -1.08
VPS33B-203ENST00000554264 ZNF772Q68DY9 489 aaPredicted RBP8.29□□□□□ -1.08
VPS33B-203ENST00000554264 CYP2U1Q7Z449 544 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms