RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 COL15A1P39059 1388 aa16.61■□□□□ 0.25
PTCH1-215ENST00000547672 A1BGP04217 495 aa16.6■□□□□ 0.25
PTCH1-215ENST00000547672 HMGB2P26583 209 aaKnown RBP16.6■□□□□ 0.25
PTCH1-215ENST00000547672 CASC1Q6TDU7 716 aa16.6■□□□□ 0.25
PTCH1-215ENST00000547672 CCDC191Q8NCU4 936 aa16.6■□□□□ 0.25
PTCH1-215ENST00000547672 KIF1BPQ96EK5 621 aa16.6■□□□□ 0.25
PTCH1-215ENST00000547672 NOP58Q9Y2X3 529 aaKnown RBP16.6■□□□□ 0.25
PTCH1-215ENST00000547672 BCL9LQ86UU0 1499 aa16.6■□□□□ 0.25
PTCH1-215ENST00000547672 NBPF26B4DH59 902 aa16.59■□□□□ 0.25
PTCH1-215ENST00000547672 SURF6O75683 361 aaKnown RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 TRIM28Q13263 835 aaKnown RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 CWF19L2Q2TBE0 894 aaKnown RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 NBPF14Q5TI25 921 aa16.59■□□□□ 0.25
PTCH1-215ENST00000547672 NBPF10Q6P3W6 841 aaKnown RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 NBPF15Q8N660 670 aa16.59■□□□□ 0.25
PTCH1-215ENST00000547672 MARCH10Q8NA82 808 aaPredicted RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 OSBPL3Q9H4L5 887 aa16.59■□□□□ 0.25
PTCH1-215ENST00000547672 CWC25Q9NXE8 425 aaPredicted RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.59■□□□□ 0.25
PTCH1-215ENST00000547672 TOGARAM1Q9Y4F4 1720 aa16.59■□□□□ 0.25
PTCH1-215ENST00000547672 PNMA6EA0A0J9YXQ4 647 aa16.58■□□□□ 0.24
PTCH1-215ENST00000547672 IGKV5-2P06315 115 aa16.58■□□□□ 0.24
PTCH1-215ENST00000547672 FAM98CQ17RN3 349 aaKnown RBP16.58■□□□□ 0.24
PTCH1-215ENST00000547672 PLEKHM2Q8IWE5 1019 aa16.58■□□□□ 0.24
PTCH1-215ENST00000547672 DNAJC10Q8IXB1 793 aa16.58■□□□□ 0.24
PTCH1-215ENST00000547672 IPO9Q96P70 1041 aaKnown RBP16.58■□□□□ 0.24
PTCH1-215ENST00000547672 AOX1Q06278 1338 aa16.57■□□□□ 0.24
PTCH1-215ENST00000547672 CYP19A1P11511 503 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-215ENST00000547672 TRPC5Q9UL62 973 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-215ENST00000547672 KAT6BQ8WYB5 2073 aa16.57■□□□□ 0.24
PTCH1-215ENST00000547672 A0A087WZG4 1122 aa16.56■□□□□ 0.24
PTCH1-215ENST00000547672 ERVV-1B6SEH8 477 aa16.56■□□□□ 0.24
PTCH1-215ENST00000547672 HSPA1LP34931 641 aa16.56■□□□□ 0.24
PTCH1-215ENST00000547672 IL6STP40189 918 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-215ENST00000547672 G3BP1Q13283 466 aaKnown RBP eCLIP16.56■□□□□ 0.24
PTCH1-215ENST00000547672 OS9Q13438 667 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-215ENST00000547672 TCIRG1Q13488 830 aa16.56■□□□□ 0.24
PTCH1-215ENST00000547672 DAXXQ9UER7 740 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-215ENST00000547672 A0A0G2JS52 829 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 MYT1Q01538 1121 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 TTC22Q5TAA0 569 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 GPATCH3Q96I76 525 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 GJD4Q96KN9 370 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-215ENST00000547672 EXOC6BQ9Y2D4 811 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 GLI3P10071 1580 aa16.55■□□□□ 0.24
PTCH1-215ENST00000547672 H7C1W4 665 aa16.54■□□□□ 0.24
PTCH1-215ENST00000547672 APBB1O00213 710 aa16.54■□□□□ 0.24
PTCH1-215ENST00000547672 CDC45O75419 566 aa16.54■□□□□ 0.24
PTCH1-215ENST00000547672 HSP90B1P14625 803 aaKnown RBP16.54■□□□□ 0.24
PTCH1-215ENST00000547672 CLASRPQ8N2M8 674 aaKnown RBP16.54■□□□□ 0.24
PTCH1-215ENST00000547672 RHPN1Q8TCX5 695 aa16.54■□□□□ 0.24
PTCH1-215ENST00000547672 STAP2Q9UGK3 403 aa16.54■□□□□ 0.24
PTCH1-215ENST00000547672 MAP3K15Q6ZN16 1313 aa16.53■□□□□ 0.24
PTCH1-215ENST00000547672 ONECUT3O60422 494 aaPredicted RBP16.53■□□□□ 0.24
PTCH1-215ENST00000547672 SUCLG2Q96I99 432 aa16.53■□□□□ 0.24
PTCH1-215ENST00000547672 ARFGEF2Q9Y6D5 1785 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 LOC102724428A0A0B4J2F2 783 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 MX1P20591 662 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 ATP6V1AP38606 617 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 PDE1AP54750 535 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 SIK1P57059 783 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 GIGYF2Q6Y7W6 1299 aaKnown RBP16.52■□□□□ 0.24
PTCH1-215ENST00000547672 TTLL7Q6ZT98 887 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 ISCA1Q9BUE6 129 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 BICC1Q9H694 974 aaKnown RBP16.52■□□□□ 0.24
PTCH1-215ENST00000547672 CCDC87Q9NVE4 849 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 DOT1LQ8TEK3 1739 aa16.52■□□□□ 0.24
PTCH1-215ENST00000547672 AFF2P51816 1311 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 ATP5J2-PTCD1G3V325 749 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 ERC2O15083 957 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 RGL2O15211 777 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 SMARCA5O60264 1052 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-215ENST00000547672 PIP4K2AP48426 406 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-215ENST00000547672 RABL6Q3YEC7 729 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-215ENST00000547672 UBE3BQ7Z3V4 1068 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 ACSBG1Q96GR2 724 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 ZBTB3Q9H5J0 574 aa16.51■□□□□ 0.23
PTCH1-215ENST00000547672 ERICH6Q7L0X2 663 aa16.5■□□□□ 0.23
PTCH1-215ENST00000547672 C16orf71Q8IYS4 520 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-215ENST00000547672 ARXQ96QS3 562 aa16.5■□□□□ 0.23
PTCH1-215ENST00000547672 COPRSQ9NQ92 184 aa16.5■□□□□ 0.23
PTCH1-215ENST00000547672 ZNF330Q9Y3S2 320 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-215ENST00000547672 AFDNP55196 1824 aaKnown RBP16.49■□□□□ 0.23
PTCH1-215ENST00000547672 TTC41PQ6P2S7 1318 aa16.49■□□□□ 0.23
PTCH1-215ENST00000547672 PCCAP05165 728 aaPredicted RBP16.49■□□□□ 0.23
PTCH1-215ENST00000547672 BECN1Q14457 450 aa16.49■□□□□ 0.23
PTCH1-215ENST00000547672 FBXO3Q9UK99 471 aa16.49■□□□□ 0.23
PTCH1-215ENST00000547672 PALLDQ8WX93 1383 aa16.49■□□□□ 0.23
PTCH1-215ENST00000547672 IFIT2P09913 472 aaKnown RBP16.48■□□□□ 0.23
PTCH1-215ENST00000547672 AK7Q96M32 723 aa16.48■□□□□ 0.23
PTCH1-215ENST00000547672 ZNF652Q9Y2D9 606 aa16.48■□□□□ 0.23
PTCH1-215ENST00000547672 ZNF831Q5JPB2 1677 aa16.48■□□□□ 0.23
PTCH1-215ENST00000547672 ATRNO75882 1429 aa16.47■□□□□ 0.23
PTCH1-215ENST00000547672 EIF5P55010 431 aaKnown RBP16.47■□□□□ 0.23
PTCH1-215ENST00000547672 CASP7P55210 303 aa16.47■□□□□ 0.23
PTCH1-215ENST00000547672 DZIP3Q86Y13 1208 aaKnown RBP16.47■□□□□ 0.23
PTCH1-215ENST00000547672 ZBTB38Q8NAP3 1195 aaPredicted RBP16.47■□□□□ 0.23
PTCH1-215ENST00000547672 KAZALD1Q96I82 304 aa16.47■□□□□ 0.23
PTCH1-215ENST00000547672 TBC1D32Q96NH3 1257 aa16.47■□□□□ 0.23
PTCH1-215ENST00000547672 SLC4A9Q96Q91 983 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms