RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 AFF2P51816 1311 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 NEURL1BA8MQ27 555 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 POLA2Q14181 598 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 VPS72Q15906 364 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 PLEKHM2Q8IWE5 1019 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 FNBP4Q8N3X1 1017 aaPredicted RBP15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 SUCLG2Q96I99 432 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 ERBB4Q15303 1308 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 HMMRO75330 724 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 SSH3Q8TE77 659 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 USP21Q9UK80 565 aa15.29■□□□□ 0.04
AP003559.1-201ENST00000540906 ATP5J2-PTCD1G3V325 749 aa15.28■□□□□ 0.04
AP003559.1-201ENST00000540906 UTYO14607 1347 aa15.27■□□□□ 0.04
AP003559.1-201ENST00000540906 GRM8O00222 908 aa15.27■□□□□ 0.04
AP003559.1-201ENST00000540906 C9orf78Q9NZ63 289 aaPredicted RBP15.27■□□□□ 0.04
AP003559.1-201ENST00000540906 IBTKQ9P2D0 1353 aaPredicted RBP15.27■□□□□ 0.03
AP003559.1-201ENST00000540906 GSPT1P15170 499 aaKnown RBP15.27■□□□□ 0.03
AP003559.1-201ENST00000540906 GCKRQ14397 625 aa15.27■□□□□ 0.03
AP003559.1-201ENST00000540906 EPHA10Q5JZY3 1008 aa15.27■□□□□ 0.03
AP003559.1-201ENST00000540906 A0A0G2JS52 829 aa15.26■□□□□ 0.03
AP003559.1-201ENST00000540906 SRGAP3O43295 1099 aa15.26■□□□□ 0.03
AP003559.1-201ENST00000540906 KCNQ2O43526 872 aa15.26■□□□□ 0.03
AP003559.1-201ENST00000540906 PLBD2Q8NHP8 589 aa15.26■□□□□ 0.03
AP003559.1-201ENST00000540906 ZBTB3Q9H5J0 574 aa15.26■□□□□ 0.03
AP003559.1-201ENST00000540906 PTF1AQ7RTS3 328 aa15.25■□□□□ 0.03
AP003559.1-201ENST00000540906 VSIG10Q8N0Z9 540 aa15.25■□□□□ 0.03
AP003559.1-201ENST00000540906 THSD7AQ9UPZ6 1657 aa15.25■□□□□ 0.03
AP003559.1-201ENST00000540906 CYP19A1P11511 503 aaPredicted RBP15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 BICC1Q9H694 974 aaKnown RBP15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 SALL3Q9BXA9 1300 aa15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 MTX1Q13505 466 aa15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 BMP2KLQ5H9B9 411 aa15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 TSHZ3Q63HK5 1081 aa15.24■□□□□ 0.03
AP003559.1-201ENST00000540906 NEXNQ0ZGT2 675 aa15.23■□□□□ 0.03
AP003559.1-201ENST00000540906 PA2G4Q9UQ80 394 aaKnown RBP15.23■□□□□ 0.03
AP003559.1-201ENST00000540906 ZNF330Q9Y3S2 320 aaPredicted RBP15.23■□□□□ 0.03
AP003559.1-201ENST00000540906 SURF6O75683 361 aaKnown RBP15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 ANP32AP39687 249 aaKnown RBP15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 CASP7P55210 303 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 ZBTB1Q9Y2K1 713 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 FAM182BQ5T319 152 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 TTC22Q5TAA0 569 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 LRRCC1Q9C099 1032 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 IL1RAPL2Q9NP60 686 aa15.22■□□□□ 0.03
AP003559.1-201ENST00000540906 TUBGCP6Q96RT7 1819 aa15.21■□□□□ 0.03
AP003559.1-201ENST00000540906 UBE3BQ7Z3V4 1068 aa15.21■□□□□ 0.03
AP003559.1-201ENST00000540906 QTRT2Q9H974 415 aaKnown RBP15.21■□□□□ 0.03
AP003559.1-201ENST00000540906 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.21■□□□□ 0.03
AP003559.1-201ENST00000540906 ITPK1Q13572 414 aa15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 KLHDC4Q8TBB5 520 aa15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 TEX13AQ9BXU3 409 aaPredicted RBP15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 RGS17Q9UGC6 210 aaPredicted RBP15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 A0A087WZG4 1122 aa15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 STARD3NLO95772 234 aa15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 MYT1Q01538 1121 aa15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 RTL5Q5HYW3 569 aaPredicted RBP15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 IPO9Q96P70 1041 aaKnown RBP15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 NOP58Q9Y2X3 529 aaKnown RBP15.2■□□□□ 0.02
AP003559.1-201ENST00000540906 PDE1AP54750 535 aa15.19■□□□□ 0.02
AP003559.1-201ENST00000540906 HLFQ16534 295 aa15.19■□□□□ 0.02
AP003559.1-201ENST00000540906 RHPN1Q8TCX5 695 aa15.19■□□□□ 0.02
AP003559.1-201ENST00000540906 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
AP003559.1-201ENST00000540906 MYH14Q7Z406 1995 aaKnown RBP15.19■□□□□ 0.02
AP003559.1-201ENST00000540906 PALLDQ8WX93 1383 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 H7C1W4 665 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 NUTM1Q86Y26 1132 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 ISCA1Q9BUE6 129 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 RREB1Q92766 1687 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 ATRNO75882 1429 aa15.18■□□□□ 0.02
AP003559.1-201ENST00000540906 LOC102724428A0A0B4J2F2 783 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 MFAP1P55081 439 aaKnown RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 SIK1P57059 783 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 INTS5Q6P9B9 1019 aaKnown RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 TBC1D9Q6ZT07 1266 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 TRPC5Q9UL62 973 aaPredicted RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 CICQ96RK0 1608 aaPredicted RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 RAB11FIP3O75154 756 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 SDSP20132 328 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 RFX5P48382 616 aaPredicted RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 KCNQ4P56696 695 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 ZNF772Q68DY9 489 aaPredicted RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 POTEAQ6S8J7 498 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 GJD4Q96KN9 370 aaPredicted RBP15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 OSBPL3Q9H4L5 887 aa15.17■□□□□ 0.02
AP003559.1-201ENST00000540906 ATP6V1AP38606 617 aa15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 FOXO4P98177 505 aa15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 TCIRG1Q13488 830 aa15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 CWC25Q9NXE8 425 aaPredicted RBP15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 MAP3K15Q6ZN16 1313 aa15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 COL5A3P25940 1745 aaPredicted RBP15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 BTAF1O14981 1849 aa15.16■□□□□ 0.02
AP003559.1-201ENST00000540906 MX1P20591 662 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 RABL6Q3YEC7 729 aaPredicted RBP15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 TBC1D32Q96NH3 1257 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 ARXQ96QS3 562 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 COL15A1P39059 1388 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 SASH1O94885 1247 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 CRKLP46109 303 aaKnown RBP15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 KIF1BPQ96EK5 621 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 SIL1Q9H173 461 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms