RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 KAT6BQ8WYB5 2073 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 CHD1LQ86WJ1 897 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 SYTL4Q96C24 671 aaPredicted RBP21.05■□□□□ 0.96
COPS3-212ENST00000539941 METTL22Q9BUU2 404 aaPredicted RBP21.05■□□□□ 0.96
COPS3-212ENST00000539941 STARD3NLO95772 234 aa21.04■□□□□ 0.96
COPS3-212ENST00000539941 PDE4AP27815 886 aa21.04■□□□□ 0.96
COPS3-212ENST00000539941 LRRFIP2Q9Y608 721 aaKnown RBP21.04■□□□□ 0.96
COPS3-212ENST00000539941 ATP8B2P98198 1209 aa21.03■□□□□ 0.96
COPS3-212ENST00000539941 DEFB132Q7Z7B7 95 aa21.03■□□□□ 0.96
COPS3-212ENST00000539941 PLBD2Q8NHP8 589 aa21.03■□□□□ 0.96
COPS3-212ENST00000539941 BACH2Q9BYV9 841 aa21.03■□□□□ 0.96
COPS3-212ENST00000539941 ARFGEF2Q9Y6D5 1785 aa21.03■□□□□ 0.96
COPS3-212ENST00000539941 RBM42Q9BTD8 480 aaKnown RBP21.02■□□□□ 0.96
COPS3-212ENST00000539941 UTYO14607 1347 aa21.02■□□□□ 0.96
COPS3-212ENST00000539941 A1BGP04217 495 aa21.02■□□□□ 0.95
COPS3-212ENST00000539941 FAM161AQ3B820 660 aa21.02■□□□□ 0.95
COPS3-212ENST00000539941 DNAJC10Q8IXB1 793 aa21.02■□□□□ 0.95
COPS3-212ENST00000539941 CICQ96RK0 1608 aaPredicted RBP21.01■□□□□ 0.95
COPS3-212ENST00000539941 ANKRD45Q5TZF3 282 aa21.01■□□□□ 0.95
COPS3-212ENST00000539941 C9orf78Q9NZ63 289 aaPredicted RBP21.01■□□□□ 0.95
COPS3-212ENST00000539941 NBPF7P0C2Y1 421 aaPredicted RBP21■□□□□ 0.95
COPS3-212ENST00000539941 PIP4K2AP48426 406 aaPredicted RBP21■□□□□ 0.95
COPS3-212ENST00000539941 NUP188Q5SRE5 1749 aa21■□□□□ 0.95
COPS3-212ENST00000539941 NEURL1BA8MQ27 555 aa20.99■□□□□ 0.95
COPS3-212ENST00000539941 GRM8O00222 908 aa20.99■□□□□ 0.95
COPS3-212ENST00000539941 IGKV5-2P06315 115 aa20.99■□□□□ 0.95
COPS3-212ENST00000539941 CWF19L2Q2TBE0 894 aaKnown RBP20.99■□□□□ 0.95
COPS3-212ENST00000539941 SMARCC1Q92922 1105 aaPredicted RBP20.99■□□□□ 0.95
COPS3-212ENST00000539941 LNPKQ9C0E8 428 aa20.99■□□□□ 0.95
COPS3-212ENST00000539941 TJP1Q07157 1748 aa20.99■□□□□ 0.95
COPS3-212ENST00000539941 ZBTB47Q9UFB7 747 aaPredicted RBP20.99■□□□□ 0.95
COPS3-212ENST00000539941 SF3B2Q13435 895 aaKnown RBP20.98■□□□□ 0.95
COPS3-212ENST00000539941 RTL5Q5HYW3 569 aaPredicted RBP20.98■□□□□ 0.95
COPS3-212ENST00000539941 SSH3Q8TE77 659 aa20.98■□□□□ 0.95
COPS3-212ENST00000539941 ACSBG1Q96GR2 724 aa20.98■□□□□ 0.95
COPS3-212ENST00000539941 SLC4A9Q96Q91 983 aa20.98■□□□□ 0.95
COPS3-212ENST00000539941 MYD88Q99836 296 aa20.98■□□□□ 0.95
COPS3-212ENST00000539941 CYP19A1P11511 503 aaPredicted RBP20.97■□□□□ 0.95
COPS3-212ENST00000539941 MTX1Q13505 466 aa20.97■□□□□ 0.95
COPS3-212ENST00000539941 PNMA6EA0A0J9YXQ4 647 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 POLA2Q14181 598 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 GCKRQ14397 625 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 UBE2Q2Q8WVN8 375 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 ANO8Q9HCE9 1232 aaPredicted RBP20.96■□□□□ 0.95
COPS3-212ENST00000539941 AFDNP55196 1824 aaKnown RBP20.96■□□□□ 0.95
COPS3-212ENST00000539941 ZNF831Q5JPB2 1677 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 C8orf34Q49A92 452 aa20.96■□□□□ 0.95
COPS3-212ENST00000539941 COL15A1P39059 1388 aa20.95■□□□□ 0.94
COPS3-212ENST00000539941 FAM196AQ6ZSG2 479 aa20.95■□□□□ 0.94
COPS3-212ENST00000539941 TTLL7Q6ZT98 887 aa20.95■□□□□ 0.94
COPS3-212ENST00000539941 PPP1R42Q7Z4L9 355 aa20.94■□□□□ 0.94
COPS3-212ENST00000539941 SRCAPQ6ZRS2 3230 aa20.94■□□□□ 0.94
COPS3-212ENST00000539941 PALLDQ8WX93 1383 aa20.94■□□□□ 0.94
COPS3-212ENST00000539941 LOC102724428A0A0B4J2F2 783 aa20.93■□□□□ 0.94
COPS3-212ENST00000539941 SIK1P57059 783 aa20.93■□□□□ 0.94
COPS3-212ENST00000539941 KIF6Q6ZMV9 814 aa20.93■□□□□ 0.94
COPS3-212ENST00000539941 NHSQ6T4R5 1651 aa20.92■□□□□ 0.94
COPS3-212ENST00000539941 SRGAP3O43295 1099 aa20.92■□□□□ 0.94
COPS3-212ENST00000539941 RREB1Q92766 1687 aa20.92■□□□□ 0.94
COPS3-212ENST00000539941 RAB11FIP3O75154 756 aa20.91■□□□□ 0.94
COPS3-212ENST00000539941 IL6STP40189 918 aaPredicted RBP20.91■□□□□ 0.94
COPS3-212ENST00000539941 BAG6P46379 1132 aa20.91■□□□□ 0.94
COPS3-212ENST00000539941 TRIM37O94972 964 aa20.9■□□□□ 0.94
COPS3-212ENST00000539941 ATP6V1AP38606 617 aa20.9■□□□□ 0.94
COPS3-212ENST00000539941 EN1Q05925 392 aaPredicted RBP20.9■□□□□ 0.94
COPS3-212ENST00000539941 HSP90AB4PQ58FF6 505 aa20.9■□□□□ 0.94
COPS3-212ENST00000539941 KCNQ2O43526 872 aa20.89■□□□□ 0.94
COPS3-212ENST00000539941 CCDC191Q8NCU4 936 aa20.89■□□□□ 0.94
COPS3-212ENST00000539941 SUCLG2Q96I99 432 aa20.89■□□□□ 0.94
COPS3-212ENST00000539941 CWC25Q9NXE8 425 aaPredicted RBP20.89■□□□□ 0.94
COPS3-212ENST00000539941 MAP3K15Q6ZN16 1313 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 TRIM28Q13263 835 aaKnown RBP20.89■□□□□ 0.93
COPS3-212ENST00000539941 BMP2KLQ5H9B9 411 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 LRRCC1Q9C099 1032 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 ZBTB3Q9H5J0 574 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 EXOC6BQ9Y2D4 811 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 ZBTB1Q9Y2K1 713 aa20.89■□□□□ 0.93
COPS3-212ENST00000539941 ATP5J2-PTCD1G3V325 749 aa20.88■□□□□ 0.93
COPS3-212ENST00000539941 KAZALD1Q96I82 304 aa20.88■□□□□ 0.93
COPS3-212ENST00000539941 CCDC87Q9NVE4 849 aa20.88■□□□□ 0.93
COPS3-212ENST00000539941 A0A087WZG4 1122 aa20.87■□□□□ 0.93
COPS3-212ENST00000539941 TCIRG1Q13488 830 aa20.87■□□□□ 0.93
COPS3-212ENST00000539941 HSP90AB3PQ58FF7 597 aa20.87■□□□□ 0.93
COPS3-212ENST00000539941 PLEKHM2Q8IWE5 1019 aa20.87■□□□□ 0.93
COPS3-212ENST00000539941 ISCA1Q9BUE6 129 aa20.87■□□□□ 0.93
COPS3-212ENST00000539941 BICC1Q9H694 974 aaKnown RBP20.87■□□□□ 0.93
COPS3-212ENST00000539941 COL5A3P25940 1745 aaPredicted RBP20.87■□□□□ 0.93
COPS3-212ENST00000539941 NPM2Q86SE8 214 aaKnown RBP20.86■□□□□ 0.93
COPS3-212ENST00000539941 ZNF330Q9Y3S2 320 aaPredicted RBP20.86■□□□□ 0.93
COPS3-212ENST00000539941 BTAF1O14981 1849 aa20.86■□□□□ 0.93
COPS3-212ENST00000539941 ERVV-1B6SEH8 477 aa20.86■□□□□ 0.93
COPS3-212ENST00000539941 H7C1W4 665 aa20.86■□□□□ 0.93
COPS3-212ENST00000539941 SURF6O75683 361 aaKnown RBP20.86■□□□□ 0.93
COPS3-212ENST00000539941 CASP7P55210 303 aa20.86■□□□□ 0.93
COPS3-212ENST00000539941 GIGYF2Q6Y7W6 1299 aaKnown RBP20.86■□□□□ 0.93
COPS3-212ENST00000539941 ANP32AP39687 249 aaKnown RBP20.85■□□□□ 0.93
COPS3-212ENST00000539941 CRKLP46109 303 aaKnown RBP20.85■□□□□ 0.93
COPS3-212ENST00000539941 ITPK1Q13572 414 aa20.85■□□□□ 0.93
COPS3-212ENST00000539941 INTS5Q6P9B9 1019 aaKnown RBP20.85■□□□□ 0.93
COPS3-212ENST00000539941 UBE3BQ7Z3V4 1068 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms