RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 HS1BP3Q53T59 392 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 IFFO2Q5TF58 517 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 PLPP6Q8IY26 295 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 MBIPQ9NS73 344 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 TTC21BQ7Z4L5 1316 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 HSP90AA1P07900 732 aaKnown RBP7.79□□□□□ -1.16
SYNE1-233ENST00000535896 FOXK1P85037 733 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 TTC22Q5TAA0 569 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 ANKRD45Q5TZF3 282 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 ANKRD44Q8N8A2 993 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 UBE2Q2Q8WVN8 375 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 ANP32BQ92688 251 aaKnown RBP7.79□□□□□ -1.16
SYNE1-233ENST00000535896 COG3Q96JB2 828 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 RRAGDQ9NQL2 400 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-233ENST00000535896 AK9Q5TCS8 1911 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 PEAK1Q9H792 1746 aa7.79□□□□□ -1.16
SYNE1-233ENST00000535896 USP31Q70CQ4 1352 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 REC8O95072 547 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 MCM2P49736 904 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 TERF1P54274 439 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 ZNF445P59923 1031 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 TRIM44Q96DX7 344 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-233ENST00000535896 PPP1R9BQ96SB3 815 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 KCNK17Q96T54 332 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 OSBPL3Q9H4L5 887 aa7.78□□□□□ -1.16
SYNE1-233ENST00000535896 PIK3C2AO00443 1686 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 ESPNB1AK53 854 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 HMMRO75330 724 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 CYP2E1P05181 493 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-233ENST00000535896 PLEKHM2Q8IWE5 1019 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 SIRT2Q8IXJ6 389 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 ABTB2Q8N961 1025 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 IL17RAQ96F46 866 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 GPHNQ9NQX3 736 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-233ENST00000535896 CRYBG1Q9Y4K1 1723 aa7.77□□□□□ -1.17
SYNE1-233ENST00000535896 KDRP35968 1356 aa7.76□□□□□ -1.17
SYNE1-233ENST00000535896 GLIPR1L2Q4G1C9 344 aa7.76□□□□□ -1.17
SYNE1-233ENST00000535896 LMOD2Q6P5Q4 547 aa7.76□□□□□ -1.17
SYNE1-233ENST00000535896 PHACTR3Q96KR7 559 aa7.76□□□□□ -1.17
SYNE1-233ENST00000535896 ABCA3Q99758 1704 aa7.76□□□□□ -1.17
SYNE1-233ENST00000535896 AOX1Q06278 1338 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 SLIT3O75094 1523 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 CHL1O00533 1208 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 RRP9O43818 475 aaKnown RBP7.75□□□□□ -1.17
SYNE1-233ENST00000535896 TPM2P07951 284 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 GSPT1P15170 499 aaKnown RBP7.75□□□□□ -1.17
SYNE1-233ENST00000535896 PTPN5P54829 565 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 ANAPC15P60006 121 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 DSG2Q14126 1118 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 CRB1P82279 1406 aa7.75□□□□□ -1.17
SYNE1-233ENST00000535896 PHRF1Q9P1Y6 1649 aaKnown RBP7.75□□□□□ -1.17
SYNE1-233ENST00000535896 BAG4O95429 457 aaKnown RBP7.74□□□□□ -1.17
SYNE1-233ENST00000535896 MBD3O95983 291 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 CCT4P50991 539 aaKnown RBP7.74□□□□□ -1.17
SYNE1-233ENST00000535896 CEP85Q6P2H3 762 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.74□□□□□ -1.17
SYNE1-233ENST00000535896 TSPYL6Q8N831 410 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 KCNH5Q8NCM2 988 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 USP26Q9BXU7 913 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 SLC4A5Q9BY07 1137 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 PANK2Q9BZ23 570 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 GZF1Q9H116 711 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-233ENST00000535896 BABAM1Q9NWV8 329 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 VPS9D1Q9Y2B5 631 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 EMILIN1Q9Y6C2 1016 aa7.74□□□□□ -1.17
SYNE1-233ENST00000535896 MARF1Q9Y4F3 1742 aaKnown RBP7.74□□□□□ -1.17
SYNE1-233ENST00000535896 LRP6O75581 1613 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 HTATSF1O43719 755 aaKnown RBP7.73□□□□□ -1.17
SYNE1-233ENST00000535896 HMOX1P09601 288 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 MCM5P33992 734 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 NASPP49321 788 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-233ENST00000535896 ZSCAN30Q86W11 494 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 NME9Q86XW9 330 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 C8orf58Q8NAV2 365 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 GAS2L2Q8NHY3 880 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 INTS4Q96HW7 963 aaKnown RBP7.73□□□□□ -1.17
SYNE1-233ENST00000535896 CPDO75976 1380 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 FLT4P35916 1363 aa7.73□□□□□ -1.17
SYNE1-233ENST00000535896 ERC2O15083 957 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 CD2BP2O95400 341 aaKnown RBP7.72□□□□□ -1.17
SYNE1-233ENST00000535896 MCCP23508 829 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-233ENST00000535896 HS6ST3Q8IZP7 471 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 PDLIM2Q96JY6 352 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 CHMP4AQ9BY43 222 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 SRCIN1Q9C0H9 1055 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 DDX49Q9Y6V7 483 aaKnown RBP7.72□□□□□ -1.17
SYNE1-233ENST00000535896 ABCC6O95255 1503 aa7.72□□□□□ -1.17
SYNE1-233ENST00000535896 NUTM2BA6NNL0 878 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-233ENST00000535896 NUTM2EB1AL46 878 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-233ENST00000535896 GCP02774 474 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 SSFA2P28290 1259 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 MEX3CQ5U5Q3 659 aaKnown RBP7.71□□□□□ -1.17
SYNE1-233ENST00000535896 NUTM2GQ5VZR2 741 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 NUTM2AQ8IVF1 878 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-233ENST00000535896 CABLES1Q8TDN4 633 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 IRX2Q9BZI1 471 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-233ENST00000535896 C1orf115Q9H7X2 142 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 NFAT5O94916 1531 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 COL14A1Q05707 1796 aaKnown RBP7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms