RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 XPCQ01831 940 aaPredicted RBP11.83□□□□□ -0.52
LSM1-202ENST00000520286 MEIOBQ8N635 442 aa11.83□□□□□ -0.52
LSM1-202ENST00000520286 GDF9O60383 454 aa11.82□□□□□ -0.52
LSM1-202ENST00000520286 PLA2G4AP47712 749 aa11.82□□□□□ -0.52
LSM1-202ENST00000520286 MRPL58Q14197 206 aaKnown RBP11.82□□□□□ -0.52
LSM1-202ENST00000520286 TREML1Q86YW5 311 aa11.82□□□□□ -0.52
LSM1-202ENST00000520286 USP35Q9P2H5 1018 aa11.82□□□□□ -0.52
LSM1-202ENST00000520286 A0A0G2JS52 829 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 TNFRSF10AO00220 468 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 SMPD1P17405 629 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 ATP2B2Q01814 1243 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 DUSP9Q99956 384 aaKnown RBP11.81□□□□□ -0.52
LSM1-202ENST00000520286 TOR4AQ9NXH8 423 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 PARP2Q9UGN5 583 aa11.81□□□□□ -0.52
LSM1-202ENST00000520286 PCSK2P16519 638 aa11.8□□□□□ -0.52
LSM1-202ENST00000520286 RNF144AP50876 292 aaPredicted RBP11.8□□□□□ -0.52
LSM1-202ENST00000520286 C4orf17Q53FE4 359 aa11.8□□□□□ -0.52
LSM1-202ENST00000520286 BACH2Q9BYV9 841 aa11.8□□□□□ -0.52
LSM1-202ENST00000520286 WWC3Q9ULE0 1092 aa11.8□□□□□ -0.52
LSM1-202ENST00000520286 RHPN1Q8TCX5 695 aa11.79□□□□□ -0.52
LSM1-202ENST00000520286 GPR152Q8TDT2 470 aa11.79□□□□□ -0.52
LSM1-202ENST00000520286 INSM2Q96T92 566 aaPredicted RBP11.79□□□□□ -0.52
LSM1-202ENST00000520286 TSEN34Q9BSV6 310 aaKnown RBP11.79□□□□□ -0.52
LSM1-202ENST00000520286 ENOX2Q16206 610 aaKnown RBP11.78□□□□□ -0.52
LSM1-202ENST00000520286 NBPF1Q3BBV0 1214 aa11.78□□□□□ -0.52
LSM1-202ENST00000520286 AIDAQ96BJ3 306 aa11.78□□□□□ -0.52
LSM1-202ENST00000520286 FAM161BQ96MY7 647 aa11.78□□□□□ -0.52
LSM1-202ENST00000520286 MRS2Q9HD23 443 aa11.78□□□□□ -0.52
LSM1-202ENST00000520286 BCS1LQ9Y276 419 aa11.78□□□□□ -0.52
LSM1-202ENST00000520286 PNMA6FA0A0J9YX94 578 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 ITGAEP38570 1179 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 MMRN1Q13201 1228 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 HIF1AQ16665 826 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 HPS1Q92902 700 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 NUDT16Q96DE0 195 aaKnown RBP11.77□□□□□ -0.53
LSM1-202ENST00000520286 SETDB2Q96T68 719 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 POLMQ9NP87 494 aaPredicted RBP11.77□□□□□ -0.53
LSM1-202ENST00000520286 RNF19AQ9NV58 838 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 FAM13BQ9NYF5 915 aa11.77□□□□□ -0.53
LSM1-202ENST00000520286 TMC4Q7Z404 712 aa11.76□□□□□ -0.53
LSM1-202ENST00000520286 TTC16Q8NEE8 873 aa11.76□□□□□ -0.53
LSM1-202ENST00000520286 ZDHHC3Q9NYG2 299 aa11.76□□□□□ -0.53
LSM1-202ENST00000520286 PLA2G2EQ9NZK7 142 aa11.76□□□□□ -0.53
LSM1-202ENST00000520286 LOC105371045A0A1W2PR82 267 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 SPINT1O43278 529 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 MICAL2O94851 1124 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 PHKA2P46019 1235 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 DAB2P98082 770 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 C8orf34Q49A92 452 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 ALG1LQ6GMV1 187 aa11.75□□□□□ -0.53
LSM1-202ENST00000520286 TGFBR3LH3BV60 316 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 SCAMP3O14828 347 aaKnown RBP11.74□□□□□ -0.53
LSM1-202ENST00000520286 SORBS3O60504 671 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 PSMD2Q13200 908 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 LINC00528Q8N1L1 170 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 C7orf43Q8WVR3 580 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 GGNBP2Q9H3C7 697 aa11.74□□□□□ -0.53
LSM1-202ENST00000520286 SPATA31C2B4DYI2 1134 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 UPP2O95045 317 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 RPLP1P05386 114 aaKnown RBP11.73□□□□□ -0.53
LSM1-202ENST00000520286 TATP17735 454 aaPredicted RBP11.73□□□□□ -0.53
LSM1-202ENST00000520286 CTSOP43234 321 aaPredicted RBP11.73□□□□□ -0.53
LSM1-202ENST00000520286 PIK3R5Q8WYR1 880 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 SUSD3Q96L08 255 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 C8orf37Q96NL8 207 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 CSRNP1Q96S65 589 aa11.73□□□□□ -0.53
LSM1-202ENST00000520286 PRR20EP86478 221 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 PRR20CP86479 221 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 PRR20DP86480 221 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 PRR20BP86481 221 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 PRR20AP86496 221 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 ORC1Q13415 861 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 LDLRAD1Q5T700 205 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 VTI1BQ9UEU0 232 aa11.72□□□□□ -0.53
LSM1-202ENST00000520286 GPC6Q9Y625 555 aaPredicted RBP11.72□□□□□ -0.53
LSM1-202ENST00000520286 A6NHS1 94 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 CAPN5O15484 640 aaPredicted RBP11.71□□□□□ -0.53
LSM1-202ENST00000520286 NEFLP07196 543 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 ZC3H6P61129 1189 aaKnown RBP11.71□□□□□ -0.53
LSM1-202ENST00000520286 BICDL1Q6ZP65 573 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 TMEM87AQ8NBN3 555 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 ZNF280CQ8ND82 737 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 KLRG1Q96E93 195 aa11.71□□□□□ -0.53
LSM1-202ENST00000520286 OPLAHO14841 1288 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 HDLBPQ00341 1268 aaKnown RBP11.7□□□□□ -0.54
LSM1-202ENST00000520286 POU4F2Q12837 409 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 IER5Q5VY09 327 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 NBPF10Q6P3W6 841 aaKnown RBP11.7□□□□□ -0.54
LSM1-202ENST00000520286 TRIM67Q6ZTA4 783 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 FBF1Q8TES7 1133 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 HSH2DQ96JZ2 352 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 ANKIB1Q9P2G1 1089 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 SHROOM4Q9ULL8 1493 aa11.7□□□□□ -0.54
LSM1-202ENST00000520286 EIF1AYO14602 144 aaKnown RBP11.69□□□□□ -0.54
LSM1-202ENST00000520286 ERCC5P28715 1186 aaPredicted RBP11.69□□□□□ -0.54
LSM1-202ENST00000520286 CFHR5Q9BXR6 569 aa11.69□□□□□ -0.54
LSM1-202ENST00000520286 DMGDHQ9UI17 866 aaKnown RBP11.69□□□□□ -0.54
LSM1-202ENST00000520286 BMP2P12643 396 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 GNA15P30679 374 aa11.68□□□□□ -0.54
LSM1-202ENST00000520286 IDH3AP50213 366 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms